7QG6
Co-crystal structure of UPF3A-RRM-NOPS-L with UPF2-MIF4GIII
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | RNA-binding domain RBD | 8088495 | 3000110 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | RNA-binding domain RBD | 8088495 | 3000110 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RNA-binding domain RBD | 8088495 | 3000110 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RNA-binding domain RBD | 8088495 | 3000110 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth D] | PF02854 | e7qg6D1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
D [auth B] | PF02854 | e7qg6B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
F | PF02854 | e7qg6F1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
H | PF02854 | e7qg6H1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], C [auth A], E, G | PF03467 | Smg-4/UPF3 family (Smg4_UPF3) | Smg-4/UPF3 family | - | Family |
B [auth D], D [auth B], F, H | PF02854 | MIF4G domain (MIF4G) | MIF4G domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], C [auth A], E, G | IPR039722 | Nonsense-mediated mRNA decay protein 3 | Family |
A [auth C], C [auth A], E, G | IPR005120 | UPF3 domain | Domain |
A [auth C], C [auth A], E, G | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
A [auth C], C [auth A], E, G | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
B [auth D], D [auth B], F, H | IPR016024 | Armadillo-type fold | Homologous Superfamily |
B [auth D], D [auth B], F, H | IPR039762 | Nonsense-mediated mRNA decay protein Nmd2/UPF2 | Family |
B [auth D], D [auth B], F, H | IPR007193 | Up-frameshift suppressor 2, C-terminal | Domain |
B [auth D], D [auth B], F, H | IPR003890 | MIF4G-like, type 3 | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth C], C [auth A], E, G | Q9H1J1 | :