Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
WSCOP2B SuperfamilyThioredoxin-like 8098206 3000031 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyThioredoxin-like 8098206 3000031 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyThioredoxin-like 8098206 3000031 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyThioredoxin-like 8098206 3000031 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FOxidored_q6e7q5yF1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
LOxidored_q6e7q5yL1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
ROxidored_q6e7q5yR1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
XOxidored_q6e7q5yX1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
W2Fe-2S_thioredx_Ne7q5yW1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
W2Fe-2S_thioredx_Ce7q5yW2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)
Q2Fe-2S_thioredx_Ne7q5yQ1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
Q2Fe-2S_thioredx_Ce7q5yQ2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)
K2Fe-2S_thioredx_Ne7q5yK1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
K2Fe-2S_thioredx_Ce7q5yK2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)
E2Fe-2S_thioredx_Ne7q5yE1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
E2Fe-2S_thioredx_Ce7q5yE2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)
ONADH_4Fe-4Se7q5yO2 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
OSLBBe7q5yO3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: SLBBECOD (1.6)
OComplex1_51Ke7q5yO1 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)
UNADH_4Fe-4Se7q5yU1 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
USLBBe7q5yU3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: SLBBECOD (1.6)
UComplex1_51Ke7q5yU2 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)
INADH_4Fe-4Se7q5yI2 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
ISLBBe7q5yI3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: SLBBECOD (1.6)
IComplex1_51Ke7q5yI1 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)
CNADH_4Fe-4Se7q5yC1 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
CSLBBe7q5yC2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: SLBBECOD (1.6)
CComplex1_51Ke7q5yC3 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.70.3270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
J3.30.70.3270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
P3.30.70.3270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
V3.30.70.3270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
O3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
O1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
U3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
U1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
I3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
I1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
C3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
C1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
B3.30.460.80 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
B1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
T3.30.460.80 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
T1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
N3.30.460.80 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
N1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
H3.30.460.80 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
H1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
M3.10.20.740 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
G3.10.20.740 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F, L, R, X
PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunitDomain
E, K, Q, W
PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
D, J, P, V
PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain
D, J, P, V
PF128004Fe-4S binding domain (Fer4_4)4Fe-4S binding domainThis superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain
C, I, O, U
PF10531SLBB domain (SLBB)SLBB domainDomain
C, I, O, U
PF22461SLBB domain (SLBB_2)SLBB domainThis entry represents a set of SLBB domains [5]. Domain
C, I, O, U
PF01512Nuo51 FMN-binding domain (Complex1_51K)Nuo51 FMN-binding domainThis entry represents the FMN-binding domain of NADH-ubiquinone oxidoreductase 51kDa subunit from NADH:ubiquinone oxidoreductase. Domain
C, I, O, U
PF10589NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)NADH-ubiquinone oxidoreductase-F iron-sulfur binding regionDomain
B, H, N, T
PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunitDomain
B, H, N, T
PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
A, G, M, S
PF04879Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4)Molybdopterin oxidoreductase Fe4S4 domainThis domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1]. Domain
A, G, M, S
PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domainDomain
A, G, M, S
PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain
A, G, M, S
PF10588NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3)NADH-ubiquinone oxidoreductase-G iron-sulfur binding regionDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F, L, R, X
NADH-quinone oxidoreductase subunit B
E, K, Q, W
NADH-quinone oxidoreductase subunit E -
D, J, P, V
NADH-quinone oxidoreductase subunit I -
C, I, O, U
NADH-quinone oxidoreductase subunit F - -
B, H, N, T
NADH-quinone oxidoreductase subunit C/D 2 -
A, G, M, S
NADH dehydrogenase I chain G

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F, L, R, X
IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
F, L, R, X
IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
E, K, Q, W
IPR042128NuoE domainDomain
E, K, Q, W
IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
E, K, Q, W
IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
E, K, Q, W
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
D, J, P, V
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
D, J, P, V
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
D, J, P, V
IPR010226NADH-quinone oxidoreductase, chain IFamily
C, I, O, U
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
C, I, O, U
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
C, I, O, U
IPR019554Soluble ligand binding domainDomain
C, I, O, U
IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
C, I, O, U
IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
C, I, O, U
IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
B, H, N, T
IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
B, H, N, T
IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
B, H, N, T
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
B, H, N, T
IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
B, H, N, T
IPR001135NADH-quinone oxidoreductase, subunit DDomain
B, H, N, T
IPR026662NADH-quinone oxidoreductase subunit CDFamily
A, G, M, S
IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
A, G, M, S
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
A, G, M, S
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
A, G, M, S
IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
A, G, M, S
IPR054351NADH-ubiquinone oxidoreductase, ferredoxin-like domainDomain
A, G, M, S
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
A, G, M, S
IPR050123Prokaryotic molybdopterin-containing oxidoreductaseFamily
A, G, M, S
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
A, G, M, S
IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain