7Q5P | pdb_00007q5p

Structure of VgrG1 from Pseudomonas protegens.

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Phage_GPD_1st	e7q5pC4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_GPD_1st	ECOD (1.6)
C	Phage_GPD_4th	e7q5pC6	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_GPD_4th	ECOD (1.6)
C	Phage_base_V	e7q5pC2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
C	VI_Rhs_Vgr	e7q5pC1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: VI_Rhs_Vgr	ECOD (1.6)
C	Phage_GPD_2nd	e7q5pC3	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: Phage_GPD_2nd	ECOD (1.6)
C	Phage_GPD_3rd	e7q5pC5	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: Phage_GPD_3rd	ECOD (1.6)
B	Phage_GPD_1st	e7q5pB4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_GPD_1st	ECOD (1.6)
B	Phage_GPD_4th	e7q5pB6	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_GPD_4th	ECOD (1.6)
B	Phage_base_V	e7q5pB2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
B	VI_Rhs_Vgr	e7q5pB1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: VI_Rhs_Vgr	ECOD (1.6)
B	Phage_GPD_2nd	e7q5pB3	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: Phage_GPD_2nd	ECOD (1.6)
B	Phage_GPD_3rd	e7q5pB5	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: Phage_GPD_3rd	ECOD (1.6)
A	Phage_GPD_1st	e7q5pA4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_GPD_1st	ECOD (1.6)
A	Phage_GPD_4th	e7q5pA6	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_GPD_4th	ECOD (1.6)
A	Phage_base_V	e7q5pA2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
A	VI_Rhs_Vgr	e7q5pA1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: VI_Rhs_Vgr	ECOD (1.6)
A	Phage_GPD_2nd	e7q5pA3	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: Phage_GPD_2nd	ECOD (1.6)
A	Phage_GPD_3rd	e7q5pA5	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: Phage_GPD_3rd	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Type VI secretion protein VgrG	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR017847	Type VI secretion system, RhsGE-associated Vgr family subset	Family
A, B, C	IPR050708	Type VI secretion system VgrG/RHS	Family
A, B, C	IPR006531	Gp5/Type VI secretion system Vgr protein, OB-fold domain	Domain
A, B, C	IPR037026	Vgr protein, OB-fold domain superfamily	Homologous Superfamily
A, B, C	IPR054030	Gp5/Type VI secretion system Vgr, C-terminal trimerisation domain	Domain
A, B, C	IPR006533	Type VI secretion system, RhsGE-associated Vgr protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.