7Q4P | pdb_00007q4p

U2 snRNP after ATP-dependent remodelling


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth G]SCOP2B SuperfamilyTriquetra zinc finger motif 8051848 3002040 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyWD40 repeat-like 8051197 3001694 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth G]PHF5e7q4pG1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: PHD finger-like domain-containing protein 5AF: PHF5ECOD (1.6)
G [auth E]SF3b10e7q4pE1 A: alpha arraysX: RDS3 complex subunit 10 (From Topology)H: RDS3 complex subunit 10 (From Topology)T: RDS3 complex subunit 10F: SF3b10ECOD (1.6)
F [auth C]CPSF_A_Ne7q4pC2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
F [auth C]MMS1_N_Ne7q4pC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
F [auth C]CPSF_A_Ce7q4pC3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
A [auth 1]zf-met_1e7q4p11 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-met_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth C]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth C]PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)RSE1/DDB1/CPSF1 first beta-propeller- Repeat
F [auth C]PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
E [auth B]PF04037Domain of unknown function (DUF382) (DUF382)Domain of unknown function (DUF382)- Family
D [auth A]PF22646PPP2R1A-like HEAT repeat (PPP2R1A-like_HEAT)PPP2R1A-like HEAT repeat- Repeat
A [auth 1]PF12874Zinc-finger of C2H2 type (zf-met)Zinc-finger of C2H2 typeThis is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth G]PHD finger-like domain-containing protein 5A
G [auth E]Splicing factor 3B subunit 5
F [auth C]Splicing factor 3B subunit 3
E [auth B]Splicing factor 3B subunit 2
D [auth A]Splicing factor 3B subunit 1
C [auth 9]Splicing factor 3A subunit 3
B [auth 2]U2 snRNA---
A [auth 1]Splicing factor 3A subunit 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth G]IPR005345PHF5-likeFamily
G [auth E]IPR017089Splicing factor 3B, subunit 5Family
G [auth E]IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10Family
F [auth C]IPR050358RSE1/DDB1/CPSF1Family
F [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth C]IPR018846RSE1/DDB1/CPSF1, first beta-propellerDomain
F [auth C]IPR004871RSE1/DDB1/CPSF1, C-terminalDomain
E [auth B]IPR006568PSP, proline-richDomain
E [auth B]IPR007180Domain of unknown function DUF382Domain
E [auth B]IPR003034SAP domainDomain
E [auth B]IPR052584Pre-mRNA Spliceosomal U2 snRNP Complex ComponentFamily
D [auth A]IPR054573Phosphatase PP2A regulatory subunit A/Splicing factor 3B subunit 1-like, HEAT repeatDomain
D [auth A]IPR016024Armadillo-type foldHomologous Superfamily
D [auth A]IPR011989Armadillo-like helicalHomologous Superfamily
D [auth A]IPR015016Splicing factor 3B subunit 1Domain
D [auth A]IPR038737Splicing factor 3B subunit 1-likeFamily
C [auth 9]IPR021966Splicing factor SF3a60 binding domainDomain
C [auth 9]IPR031774SF3A3 domainDomain
C [auth 9]IPR024598Splicing factor SF3a60 /Prp9 subunit, C-terminalDomain
C [auth 9]IPR025086SDE2/SF3A3, SAP domainDomain
C [auth 9]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain
C [auth 9]IPR051421RNA Processing and DNA Damage Response RegulatorFamily
A [auth 1]IPR031781SF3A2 domainDomain
A [auth 1]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
A [auth 1]IPR013087Zinc finger C2H2-typeDomain
A [auth 1]IPR052092Splicing Factor 3A Subunit 2Family
A [auth 1]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
A [auth 1]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
H [auth G]PharosQ7RTV0
G [auth E]PharosQ9BWJ5
F [auth C]PharosQ15393
E [auth B]PharosQ13435
D [auth A]PharosO75533
C [auth 9]PharosQ12874
A [auth 1]PharosQ15428