7Q4O
Substrate-bound A-like U2 snRNP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F [auth C] | SCOP2B Superfamily | WD40 repeat-like | 8052534 | 3001694 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | WD40 repeat-like | 8052534 | 3001694 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | WD40 repeat-like | 8052535 | 3001694 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | WD40 repeat-like | 8051197 | 3001694 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | RNA-binding domain RBD | 8040695 | 3000110 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Triquetra zinc finger motif | 8051848 | 3002040 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | zf-met_1 | e7q4o11 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-met_1 | ECOD (1.6) |
D [auth A] | KOG0213 | e7q4oA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG0213 | ECOD (1.6) |
F [auth C] | CPSF_A_N | e7q4oC4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
F [auth C] | MMS1_N_C | e7q4oC3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
F [auth C] | MMS1_N_N | e7q4oC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
F [auth C] | CPSF_A_C | e7q4oC2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
G [auth E] | SF3b10 | e7q4oE1 | A: alpha arrays | X: RDS3 complex subunit 10 (From Topology) | H: RDS3 complex subunit 10 (From Topology) | T: RDS3 complex subunit 10 | F: SF3b10 | ECOD (1.6) |
H [auth F] | RRM_1_2 | e7q4oF1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_2 | ECOD (1.6) |
I [auth G] | PHF5 | e7q4oG1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: PHD finger-like domain-containing protein 5A | F: PHF5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1] | PF12874 | Zinc-finger of C2H2 type (zf-met) | Zinc-finger of C2H2 type | This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. | Domain |
C [auth 9] | PF11931 | SF3a60/Prp9 C-terminal (SF3a60_Prp9_C) | SF3a60/Prp9 C-terminal | - | Family |
E [auth B] | PF04037 | Domain of unknown function (DUF382) (DUF382) | Domain of unknown function (DUF382) | - | Family |
F [auth C] | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat |
F [auth C] | PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
G [auth E] | PF07189 | Splicing factor 3B subunit 10 (SF3b10) (SF3b10) | Splicing factor 3B subunit 10 (SF3b10) | - | Family |
H [auth F] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
I [auth G] | PF03660 | PHF5-like protein (PHF5) | PHF5-like protein | - | Family |