7Q46

Crystal structure of RCC1-Like domain 2 of ubiquitin ligase HERC2 in complex with DXDKDED motif of pericentriolar material 1 protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00415	e7q46A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)
B [auth C]	PF00415	e7q46C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)
D [auth E]	PF00415	e7q46E1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], D [auth E]	PF00415	Regulator of chromosome condensation (RCC1) repeat (RCC1)	Regulator of chromosome condensation (RCC1) repeat	-	Repeat
C [auth D], E [auth F], F [auth B]	PF15717	Pericentriolar material 1 C terminus (PCM1_C)	Pericentriolar material 1 C terminus	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], D [auth E]	E3 ubiquitin-protein ligase HERC2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity SUMO binding protein binding binding ubiquitin-like protein binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation organonitrogen compound metabolic process primary metabolic process organic substance metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal organonitrogen compound catabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process organic substance catabolic process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization intracellular protein transport DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA repair	membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth D], E [auth F], F [auth B]	Pericentriolar material 1 protein	molecular adaptor activity identical protein binding protein binding binding	protein localization to microtubule cytoskeleton protein localization cellular localization protein localization to microtubule organizing center localization protein localization to cytoskeleton protein localization to organelle cellular macromolecule localization macromolecule localization cellular process protein localization to centrosome cell projection organization transport plasma membrane bounded cell projection assembly protein localization to microtubule cytoskeleton protein localization cellular localization protein localization to microtubule organizing center localization protein localization to cytoskeleton protein localization to organelle cellular macromolecule localization macromolecule localization cellular process protein localization to centrosome cell projection organization transport plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization cellular component assembly establishment of localization in cell cilium assembly transport along microtubule cellular component organization or biogenesis cilium organization intraciliary transport organelle assembly plasma membrane bounded cell projection organization intraciliary transport involved in cilium assembly intracellular transport establishment of localization protein-containing complex localization organelle organization microtubule-based transport cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cell projection assembly regulation of protein complex stability biological regulation regulation of biological quality microtubule cytoskeleton organization microtubule anchoring cytoskeleton organization non-motile cilium assembly cytoplasmic microtubule organization supramolecular fiber organization protein-containing complex localization to centriolar satellite microtubule organizing center organization centrosome cycle cell cycle cell cycle process behavior multicellular organismal process biological process involved in intraspecies interaction between organisms social behavior regulation of cellular process regulation of developmental process cellular developmental process negative regulation of biological process cell development regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development negative regulation of neurogenesis multicellular organism development neurogenesis cell differentiation anatomical structure development negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation system development developmental process regulation of multicellular organismal development regulation of biological process negative regulation of developmental process nervous system development negative regulation of cell development negative regulation of multicellular organismal process neuron migration generation of neurons cell migration cell motility establishment of organelle localization forebrain development organelle localization nuclear migration cell proliferation in forebrain head development cell population proliferation animal organ development brain development nucleus localization interkinetic nuclear migration central nervous system development neural precursor cell proliferation microtubule anchoring at microtubule organizing center microtubule anchoring at centrosome regulation of localization establishment of protein localization nitrogen compound transport regulation of protein localization positive regulation of biological process positive regulation of establishment of protein localization positive regulation of protein transport positive regulation of intracellular transport positive regulation of cellular process regulation of intracellular transport regulation of transport organic substance transport regulation of establishment of protein localization regulation of protein transport positive regulation of transport protein transport regulation of cellular localization positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport neuronal stem cell population maintenance maintenance of cell number stem cell population maintenance	membrane cellular anatomical entity apical part of cell membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane membrane cellular anatomical entity apical part of cell membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane ciliary transition zone cell projection cilium plasma membrane bounded cell projection centrosome microtubule organizing center cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle centriolar satellite centriole cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex pericentriolar material ciliary basal body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], D [auth E]	IPR037976	HERC2, APC10 domain	Domain
A, B [auth C], D [auth E]	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A, B [auth C], D [auth E]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A, B [auth C], D [auth E]	IPR006624	Beta-propeller repeat TECPR	Repeat
A, B [auth C], D [auth E]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A, B [auth C], D [auth E]	IPR010606	Mib-herc2	Domain
A, B [auth C], D [auth E]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A, B [auth C], D [auth E]	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
A, B [auth C], D [auth E]	IPR000433	Zinc finger, ZZ-type	Domain
A, B [auth C], D [auth E]	IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	Homologous Superfamily
A, B [auth C], D [auth E]	IPR000569	HECT domain	Domain
A, B [auth C], D [auth E]	IPR037252	Mib/herc2 domain superfamily	Homologous Superfamily
A, B [auth C], D [auth E]	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
A, B [auth C], D [auth E]	IPR041987	HERC2, zinc finger, ZZ-type	Domain
A, B [auth C], D [auth E]	IPR004939	APC10/DOC domain	Domain
A, B [auth C], D [auth E]	IPR021097	CPH domain	Domain
A, B [auth C], D [auth E]	IPR001199	Cytochrome b5-like heme/steroid binding domain	Domain
C [auth D], E [auth F], F [auth B]	IPR031446	Pericentriolar material 1 protein, C-terminal	Domain
C [auth D], E [auth F], F [auth B]	IPR024138	Pericentriolar material 1 protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], D [auth E]	Pharos: O95714	developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis breast carcinoma Pick disease schizophrenia autosomal recessive non-syndromic intellectual disability corneal disease glioblastoma osteosarcoma
C [auth D], E [auth F], F [auth B]	Pharos: Q15154	schizophrenia astrocytic tumor breast cancer hereditary spastic paraplegia lung adenocarcinoma malignant ependymoma psoriasis thyroid gland papillary carcinoma atrial fibrillation breast carcinoma invasive ductal breast carcinoma lung cancer medulloblastoma atypical teratoid rhabdoid tumor cancer schizophrenia astrocytic tumor breast cancer hereditary spastic paraplegia lung adenocarcinoma malignant ependymoma psoriasis thyroid gland papillary carcinoma atrial fibrillation breast carcinoma invasive ductal breast carcinoma lung cancer medulloblastoma atypical teratoid rhabdoid tumor cancer large cell medulloblastoma malignant colon neoplasm ovarian cancer sinusitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.