7Q42

Crystal structure of RCC1-Like domain 2 of ubiquitin ligase HERC2 in complex with DXDKDED motif of chromatin reader BAZ2B

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00415	e7q42A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)
B [auth C]	PF00415	e7q42C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)
C [auth E]	PF00415	e7q42E1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E]	PF00415	Regulator of chromosome condensation (RCC1) repeat (RCC1)	Regulator of chromosome condensation (RCC1) repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth E]	E3 ubiquitin-protein ligase HERC2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity SUMO binding protein binding binding ubiquitin-like protein binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation organonitrogen compound metabolic process primary metabolic process organic substance metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal organonitrogen compound catabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process organic substance catabolic process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization intracellular protein transport DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA repair	membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D, E [auth B], F	Bromodomain adjacent to zinc finger domain protein 2B	DNA binding binding organic cyclic compound binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization chromatin remodeling cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth E]	IPR037976	HERC2, APC10 domain	Domain
A, B [auth C], C [auth E]	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A, B [auth C], C [auth E]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR006624	Beta-propeller repeat TECPR	Repeat
A, B [auth C], C [auth E]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A, B [auth C], C [auth E]	IPR010606	Mib-herc2	Domain
A, B [auth C], C [auth E]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
A, B [auth C], C [auth E]	IPR000433	Zinc finger, ZZ-type	Domain
A, B [auth C], C [auth E]	IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR000569	HECT domain	Domain
A, B [auth C], C [auth E]	IPR037252	Mib/herc2 domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
A, B [auth C], C [auth E]	IPR041987	HERC2, zinc finger, ZZ-type	Domain
A, B [auth C], C [auth E]	IPR004939	APC10/DOC domain	Domain
A, B [auth C], C [auth E]	IPR021097	CPH domain	Domain
A, B [auth C], C [auth E]	IPR001199	Cytochrome b5-like heme/steroid binding domain	Domain
D, E [auth B], F	IPR001965	Zinc finger, PHD-type	Domain
D, E [auth B], F	IPR037374	BAZ2A/BAZ2B, bromodomain	Domain
D, E [auth B], F	IPR018359	Bromodomain, conserved site	Conserved Site
D, E [auth B], F	IPR028941	WHIM2 domain	Domain
D, E [auth B], F	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
D, E [auth B], F	IPR001739	Methyl-CpG DNA binding	Domain
D, E [auth B], F	IPR001487	Bromodomain	Domain
D, E [auth B], F	IPR036427	Bromodomain-like superfamily	Homologous Superfamily
D, E [auth B], F	IPR018501	DDT domain	Domain
D, E [auth B], F	IPR019787	Zinc finger, PHD-finger	Domain
D, E [auth B], F	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
D, E [auth B], F	IPR016177	DNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth C], C [auth E]	Pharos: O95714	developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis breast carcinoma Pick disease schizophrenia autosomal recessive non-syndromic intellectual disability corneal disease glioblastoma osteosarcoma
D, E [auth B], F	Pharos: Q9UIF8	astrocytic tumor malignant ependymoma ovarian cancer progressive supranuclear palsy cardiac arrest malignant mesothelioma Pick disease Hashimoto thyroiditis medulloblastoma primitive neuroectodermal tumor