7PZD | pdb_00007pzd

Cryo-EM structure of the NLRP3 PYD filament


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth X]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
Q [auth W]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
P [auth V]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
O [auth U]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
L [auth R]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
K [auth Q]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
J [auth P]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
I [auth O]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
H [auth N]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
G [auth M]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
F [auth L]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
E [auth K]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
C [auth I]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
B [auth H]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)
A [auth G]SCOP2B SuperfamilyDEATH domain 8088526 3000069 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
R [auth X]tRNA-synt_2de7pzdX1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
Q [auth W]tRNA-synt_2de7pzdW1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
P [auth V]tRNA-synt_2de7pzdV1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
O [auth U]tRNA-synt_2de7pzdU1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
N [auth T]tRNA-synt_2de7pzdT1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
M [auth S]tRNA-synt_2de7pzdS1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
L [auth R]tRNA-synt_2de7pzdR1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
K [auth Q]tRNA-synt_2de7pzdQ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
J [auth P]tRNA-synt_2de7pzdP1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
I [auth O]tRNA-synt_2de7pzdO1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
H [auth N]tRNA-synt_2de7pzdN1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
G [auth M]tRNA-synt_2de7pzdM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
F [auth L]tRNA-synt_2de7pzdL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
E [auth K]tRNA-synt_2de7pzdK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
D [auth J]tRNA-synt_2de7pzdJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
C [auth I]tRNA-synt_2de7pzdI1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
B [auth H]tRNA-synt_2de7pzdH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)
A [auth G]tRNA-synt_2de7pzdG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: tRNA-synt_2dECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02758PAAD/DAPIN/Pyrin domain (PYRIN)PAAD/DAPIN/Pyrin domainThis domain is predicted to contain 6 alpha helices and to have the same fold as the Pfam:PF00531 domain. This similarity may mean that this is a protein-protein interaction domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NACHT, LRR and PYD domains-containing protein 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR001611Leucine-rich repeatRepeat
IPR004020DAPIN domainDomain
IPR029495NACHT-associated domainDomain
IPR007111NACHT nucleoside triphosphataseDomain
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
IPR041075NOD1/2, winged helix domainDomain
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
IPR050637NLRP family, innate immunity and inflammation regulatorsFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
Q96P20