7PZA | pdb_00007pza

Structure of the Clr-cAMP-DNA complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BcNMP_bindinge7pzaB1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: cNMP_bindingECOD (1.6)
BHTH_Crp_2e7pzaB2 A: alpha arraysX: HTHH: HTHT: wingedF: HTH_Crp_2ECOD (1.6)
AcNMP_bindinge7pzaA1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: cNMP_bindingECOD (1.6)
AHTH_Crp_2e7pzaA2 A: alpha arraysX: HTHH: HTHT: wingedF: HTH_Crp_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.10 Mainly Beta Sandwich Jelly Rolls Jelly RollsCATH (utative)
A2.60.120.10 Mainly Beta Sandwich Jelly Rolls Jelly RollsCATH (utative)
A1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF13545Crp-like helix-turn-helix domain (HTH_Crp_2)Crp-like helix-turn-helix domainThis family represents a crp-like helix-turn-helix domain that is likely to bind DNA. Domain
A, B
PF00027Cyclic nucleotide-binding domain (cNMP_binding)Cyclic nucleotide-binding domainThis domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, F
DNA (5'-D(*GP*CP*GP*AP*GP*TP*AP*AP*TP*GP*TP*TP*AP*C)-3')---
C, E
DNA (5'-D(*CP*TP*AP*GP*GP*TP*AP*AP*CP*AP*TP*TP*AP*CP*TP*CP*GP)-3')---
A, B
Putative cAMP-binding protein-catabolite gene activator -