7PKQ

Small subunit of the Chlamydomonas reinhardtii mitoribosome


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Q [auth f]PF01250e7pkqf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
R [auth p]PF00886e7pkqp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
S [auth r]PF01084e7pkqr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
T [auth w]PF14943e7pkqw1 A: extended segmentsX: Mitoribosomal protein mS26 (From Topology)H: Mitoribosomal protein mS26 (From Topology)T: Mitoribosomal protein mS26F: PF14943ECOD (1.6)
Y [auth a]F_UNCLASSIFIEDe7pkqa1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
Z [auth b]PF00318e7pkqb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
DA [auth v]F_UNCLASSIFIEDe7pkqv1 A: alpha arraysX: RuvA-CH: Mitoribosomal protein mS23 (From Topology)T: Mitoribosomal protein mS23F: F_UNCLASSIFIEDECOD (1.6)
FA [auth l]PF00164e7pkql1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
HA [auth k]PF00411e7pkqk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
JA [auth m]PF00416e7pkqm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
KA [auth n]PF00253e7pkqn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
MA [auth s]PF00203e7pkqs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
OA [auth i]PF00380e7pkqi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
PA [auth x]F_UNCLASSIFIEDe7pkqx2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: F_UNCLASSIFIEDECOD (1.6)
PA [auth x]PF10236e7pkqx1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF10236ECOD (1.6)
E [auth L]PF02330e7pkqL1 A: a+b two layersX: Acidic mitochondrial matrix protein p32-likeH: Acidic mitochondrial matrix protein p32 (From Topology)T: Acidic mitochondrial matrix protein p32F: PF02330ECOD (1.6)
F [auth M]PF02330e7pkqM1 A: a+b two layersX: Acidic mitochondrial matrix protein p32-likeH: Acidic mitochondrial matrix protein p32 (From Topology)T: Acidic mitochondrial matrix protein p32F: PF02330ECOD (1.6)
G [auth N]PF02330e7pkqN1 A: a+b two layersX: Acidic mitochondrial matrix protein p32-likeH: Acidic mitochondrial matrix protein p32 (From Topology)T: Acidic mitochondrial matrix protein p32F: PF02330ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Q [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
R [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
S [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
AA [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
AA [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
BA [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
EA [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
HA [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
IA [auth j]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
KA [auth n]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
LA [auth u]PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
MA [auth s]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
NA [auth g]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
OA [auth i]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
QA [auth c]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
E [auth L],
F [auth M],
G [auth N]
PF02330Mitochondrial glycoprotein (MAM33)Mitochondrial glycoproteinThis mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]mS35- - -
L [auth W]Unk3---
M [auth X]Unk4---
N [auth Y]Unk5---
O [auth Z]Unk6---
P [auth d]uS4m- - -
Q [auth f]Mitochondrial ribosomal protein S6
R [auth p]bS16m
S [auth r]bS18m
T [auth w]mS26- -
U [auth 1]S1 rRNA---
B [auth C]mS45- - -
V [auth 4]S4 rRNA---
W [auth 2]S2 rRNA---
X [auth 3]S3 rRNA---
Y [auth a]bS1m- - -
Z [auth b]uS2m
AA [auth e]S5 DRBM domain-containing protein
BA [auth o]uS15m
CA [auth z]mS34
DA [auth v]mS23- - -
EA [auth q]uS17m
C [auth D]mS45-insert---
FA [auth l]uS12m
GA [auth h]uS8m- - -
HA [auth k]uS11m
IA [auth j]Ribosomal_S10 domain-containing protein
JA [auth m]Mitochondrial ribosomal protein S13
KA [auth n]Mitochondrial ribosomal protein S14
LA [auth u]Plastid-specific ribosomal protein 4- -
MA [auth s]uS19m
NA [auth g]uS7m,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein
OA [auth i]30S ribosomal protein S9, chloroplastic
D [auth K]mS31/46---
PA [auth x]mS29 -
QA [auth c]Ribosomal_S3_C domain-containing protein
RA [auth y]mS33- - -
E [auth L],
F [auth M],
G [auth N]
mS105- -
H [auth O]mS106- - -
I [auth P]mS107- - -
J [auth U]Unk1---
K [auth V]Unk2---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Q [auth f]IPR000529Small ribosomal subunit protein bS6Family
Q [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
Q [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
Q [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
R [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
R [auth p]IPR000307Small ribosomal subunit protein bS16Family
S [auth r]IPR001648Small ribosomal subunit protein bS18Family
S [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
T [auth w]IPR026140Small ribosomal subunit protein mS26Family
Z [auth b]IPR008160Collagen triple helix repeatRepeat
Z [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
Z [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
Z [auth b]IPR001865Small ribosomal subunit protein uS2Family
AA [auth e]IPR000851Small ribosomal subunit protein uS5Family
AA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
AA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
AA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
AA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
BA [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
BA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth o]IPR000589Small ribosomal subunit protein uS15Family
CA [auth z]IPR032053Small ribosomal subunit protein mS34Family
EA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth q]IPR000266Small ribosomal subunit protein uS17Family
FA [auth l]IPR006032Small ribosomal subunit protein uS12Family
FA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
HA [auth k]IPR001971Small ribosomal subunit protein uS11Family
HA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IA [auth j]IPR001848Small ribosomal subunit protein uS10Family
IA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
IA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
JA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
JA [auth m]IPR001892Small ribosomal subunit protein uS13Family
JA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
KA [auth n]IPR001209Small ribosomal subunit protein uS14Family
LA [auth u]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
LA [auth u]IPR031414Small ribosomal subunit protein bTHXFamily
MA [auth s]IPR002222Small ribosomal subunit protein uS19Family
MA [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
MA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
MA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
NA [auth g]IPR000235Small ribosomal subunit protein uS7Family
NA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
NA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
OA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
OA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
OA [auth i]IPR000754Small ribosomal subunit protein uS9Family
OA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PA [auth x]IPR019368Small ribosomal subunit protein mS29Family
PA [auth x]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
QA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
QA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth L],
F [auth M],
G [auth N]
IPR036561Mitochondrial glycoprotein superfamilyHomologous Superfamily
E [auth L],
F [auth M],
G [auth N]
IPR003428Mitochondrial glycoproteinFamily