7PKQ
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
Q [auth f] | PF01250 | e7pkqf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
R [auth p] | PF00886 | e7pkqp1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
S [auth r] | PF01084 | e7pkqr1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
T [auth w] | PF14943 | e7pkqw1 | A: extended segments | X: Mitoribosomal protein mS26 (From Topology) | H: Mitoribosomal protein mS26 (From Topology) | T: Mitoribosomal protein mS26 | F: PF14943 | ECOD (1.6) |
Y [auth a] | F_UNCLASSIFIED | e7pkqa1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
Z [auth b] | PF00318 | e7pkqb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
DA [auth v] | F_UNCLASSIFIED | e7pkqv1 | A: alpha arrays | X: RuvA-C | H: Mitoribosomal protein mS23 (From Topology) | T: Mitoribosomal protein mS23 | F: F_UNCLASSIFIED | ECOD (1.6) |
FA [auth l] | PF00164 | e7pkql1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
HA [auth k] | PF00411 | e7pkqk1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
JA [auth m] | PF00416 | e7pkqm1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
KA [auth n] | PF00253 | e7pkqn1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
MA [auth s] | PF00203 | e7pkqs1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
OA [auth i] | PF00380 | e7pkqi1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
PA [auth x] | F_UNCLASSIFIED | e7pkqx2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: F_UNCLASSIFIED | ECOD (1.6) |
PA [auth x] | PF10236 | e7pkqx1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10236 | ECOD (1.6) |
E [auth L] | PF02330 | e7pkqL1 | A: a+b two layers | X: Acidic mitochondrial matrix protein p32-like | H: Acidic mitochondrial matrix protein p32 (From Topology) | T: Acidic mitochondrial matrix protein p32 | F: PF02330 | ECOD (1.6) |
F [auth M] | PF02330 | e7pkqM1 | A: a+b two layers | X: Acidic mitochondrial matrix protein p32-like | H: Acidic mitochondrial matrix protein p32 (From Topology) | T: Acidic mitochondrial matrix protein p32 | F: PF02330 | ECOD (1.6) |
G [auth N] | PF02330 | e7pkqN1 | A: a+b two layers | X: Acidic mitochondrial matrix protein p32-like | H: Acidic mitochondrial matrix protein p32 (From Topology) | T: Acidic mitochondrial matrix protein p32 | F: PF02330 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
Q [auth f] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
R [auth p] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
S [auth r] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
AA [auth e] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
AA [auth e] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
BA [auth o] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
EA [auth q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
HA [auth k] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
IA [auth j] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
KA [auth n] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
LA [auth u] | PF17070 | 30S ribosomal protein Thx (Thx) | 30S ribosomal protein Thx | - | Family |
MA [auth s] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
NA [auth g] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
OA [auth i] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
QA [auth c] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
E [auth L], F [auth M], G [auth N] | PF02330 | Mitochondrial glycoprotein (MAM33) | Mitochondrial glycoprotein | This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions [1]. | Domain |