Small subunit of the Chlamydomonas reinhardtii mitoribosome
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| S [auth r] | Ribosomal_S2 | e7pkqr1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
| AA [auth e] | Glyco_hydro_98C | e7pkqe01 | A: alpha arrays | X: Histone-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Glyco_hydro_98C | ECOD (v295) |
| JA [auth m] | Peptidase_S9, Peptidase_S15 | e7pkqm1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| G [auth N] | Ribosomal_S2 | e7pkqN1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
| F [auth M] | HIG_1_N | e7pkqM1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: HIG_1_N | ECOD (v295) |
| E [auth L] | HIG_1_N | e7pkqL1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: HIG_1_N | ECOD (v295) |
| PA [auth x] | Peptidase_S9, Peptidase_S15 | e7pkqx1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| OA [auth i] | Peptidase_S9, Peptidase_S15 | e7pkqi1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| MA [auth s] | Peptidase_S9, Peptidase_S15 | e7pkqs1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| KA [auth n] | Peptidase_S9, Peptidase_S15 | e7pkqn1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| HA [auth k] | Peptidase_S9, Peptidase_S15 | e7pkqk1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| FA [auth l] | Peptidase_S9, Peptidase_S15 | e7pkql1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| EA [auth q] | Glyco_hydro_98C | e7pkqq01 | A: alpha arrays | X: Histone-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Glyco_hydro_98C | ECOD (v295) |
| DA [auth v] | Peptidase_S9, Peptidase_S15 | e7pkqv1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S9, Peptidase_S15 | ECOD (v295) |
| Z [auth b] | Ribosomal_S2 | e7pkqb1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
| Y [auth a] | Ribosomal_S2 | e7pkqa1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
| T [auth w] | Ribosomal_S2 | e7pkqw1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
| R [auth p] | Ribosomal_S2 | e7pkqp1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
| Q [auth f] | Ribosomal_S2 | e7pkqf1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_S2 | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| L [auth W] | PF14943 | Mitochondrial ribosome subunit S26 (MRP-S26) | Mitochondrial ribosome subunit S26 | - | Family |
| I [auth P] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| H [auth O] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| E [auth L], F [auth M], G [auth N] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| E [auth L], F [auth M], G [auth N] | PF02330 | Mitochondrial glycoprotein (MAM33) | Mitochondrial glycoprotein | This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions [1]. | Domain |
| D [auth K] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| B [auth C] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |














