7PIL

Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth BM]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
O [auth BA]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
P [auth BB]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Q [auth BC]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
R [auth BD]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
S [auth BE]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
T [auth BF]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
U [auth BG]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
V [auth BH]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
W [auth BI]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
X [auth BJ]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Y [auth BK]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
Z [auth BL]SCOP2B SuperfamilyLight-harvesting complex subunits8076353 3000199 SCOP2B (2022-06-29)
CA [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H transmembrane region8100956 3000750 SCOP2B (2022-06-29)
CA [auth H]SCOP2B SuperfamilyPRC-barrel domain8099396 3000637 SCOP2B (2022-06-29)
DA [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099398 3000736 SCOP2B (2022-06-29)
EA [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre L and M subunits8099400 3000736 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth BM]PF00556e7pilBM1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
BA [auth BN]PF00556e7pilBN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
O [auth BA]PF00556e7pilBA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
P [auth BB]PF00556e7pilBB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Q [auth BC]PF00556e7pilBC1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
R [auth BD]PF00556e7pilBD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
S [auth BE]PF00556e7pilBE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
T [auth BF]PF00556e7pilBF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
U [auth BG]PF00556e7pilBG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
V [auth BH]PF00556e7pilBH1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
W [auth BI]PF00556e7pilBI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
X [auth BJ]PF00556e7pilBJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Y [auth BK]PF00556e7pilBK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
Z [auth BL]PF00556e7pilBL1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
CA [auth H]PF03967,PF05239e7pilH1 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PF03967,PF05239ECOD (1.6)
CA [auth H]PF03967e7pilH2 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PF03967ECOD (1.6)
DA [auth L]PF00124e7pilL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
EA [auth M]PF00124e7pilM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
GA [auth X]PF11511e7pilX1 A: extended segmentsX: Intrinsic membrane protein pufX (From Topology)H: Intrinsic membrane protein pufX (From Topology)T: Intrinsic membrane protein pufXF: PF11511ECOD (1.6)
A [auth AA]PF00556e7pilAA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
B [auth AB]PF00556e7pilAB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
C [auth AC]PF00556e7pilAC1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
D [auth AD]PF00556e7pilAD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
E [auth AE]PF00556e7pilAE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
F [auth AF]PF00556e7pilAF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
G [auth AG]PF00556e7pilAG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
H [auth AH]PF00556e7pilAH1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
I [auth AI]PF00556e7pilAI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
J [auth AJ]PF00556e7pilAJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
K [auth AK]PF00556e7pilAK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
L [auth AL]PF00556e7pilAL1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
M [auth AM]PF00556e7pilAM1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)
N [auth AN]PF00556e7pilAN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: PF00556ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
CA [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
CA [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
DA [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
EA [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
GA [auth X]PF11511Intrinsic membrane protein PufX (RhodobacterPufX)Intrinsic membrane protein PufX- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Light-harvesting protein B-875 beta chain
CA [auth H]Reaction center protein H chain
DA [auth L]Reaction center protein L chain
EA [auth M]Reaction center protein M chain
FA [auth UU]RC-Y- -
GA [auth X]Intrinsic membrane protein PufX-
Light-harvesting protein B-875 alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
CA [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
CA [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
CA [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
CA [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
CA [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
CA [auth H]IPR027275PRC-barrel domainDomain
DA [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
DA [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
DA [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
EA [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
EA [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
EA [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
GA [auth X]IPR020169Intrinsic membrane protein family, PufXFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily