Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054849 | 3000071 | SCOP2B (2022-06-29) |
| J [auth e] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054845 | 3000071 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054845 | 3000071 | SCOP2B (2022-06-29) |
| F [auth H] | SCOP2B Superfamily | MHC antigen-recognition domain | 8033653 | 3000521 | SCOP2B (2022-06-29) |
| F [auth H] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054579 | 3000071 | SCOP2B (2022-06-29) |
| G [auth L] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8003766 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Glyco_hydro_98C | e7phrA01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Glyco_hydro_98C | ECOD (develop294) |
| B | Glyco_hydro_98C | e7phrB01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Glyco_hydro_98C | ECOD (develop294) |
| C | Glyco_hydro_98C | e7phrC01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Glyco_hydro_98C | ECOD (develop294) |
| D | Glyco_hydro_98C | e7phrD01 | A: alpha bundles | X: Rossmann-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: Glyco_hydro_98C | ECOD (develop294) |
| J [auth e] | e7phre1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: | ECOD (develop294) | |
| E | e7phrE1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: | ECOD (develop294) | |
| F [auth H] | e7phrH1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: | ECOD (develop294) | |
| K [auth z] | e7phrz1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: | ECOD (develop294) | |
| I [auth Z] | e7phrZ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: | ECOD (develop294) | |
| G [auth L] | e7phrL1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth H] | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (utative) |
| F [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF16680 | T-cell surface glycoprotein CD3 delta chain (Ig_4) | T-cell surface glycoprotein CD3 delta chain | This is an immunoglobulin-like domain. It is found on the T-cell surface glycoprotein CD3 delta chain. CD3delta and CD3epsilon complex together as part of the T-cell receptor complex [1]. | Domain | |
| PF16680 | T-cell surface glycoprotein CD3 delta chain (Ig_4) | T-cell surface glycoprotein CD3 delta chain | This is an immunoglobulin-like domain. It is found on the T-cell surface glycoprotein CD3 delta chain. CD3delta and CD3epsilon complex together as part of the T-cell receptor complex [1]. | Domain | |
| E, J [auth e] | PF16681 | Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain (Ig_5) | Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain | Ig_5 is an immunoglobulin domain found on T-cell surface glycoprotein CD3 epsilon chain. It forms a first-order complex with T-cell surface glycoprotein CD3 delta chain as part of the T-cell receptor complex [1]. | Domain |
| F [auth H] | PF00129 | Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I) | Class I Histocompatibility antigen, domains alpha 1 and 2 | Domain | |
| F [auth H] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain | |
| I [auth Z], K [auth z] | PF11628 | T-cell surface glycoprotein CD3 zeta chain (TCR_zetazeta) | T-cell surface glycoprotein CD3 zeta chain | - | Family |
| G [auth L] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Bitopic proteins | T-cell and B-cell receptor complexes | Pre-T-cell antigen receptor |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














