7PHR | pdb_00007phr

Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054849 3000071 SCOP2B (2022-06-29)
J [auth e]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054845 3000071 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054845 3000071 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyMHC antigen-recognition domain 8033653 3000521 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054579 3000071 SCOP2B (2022-06-29)
G [auth L]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGlyco_hydro_98Ce7phrA01 A: alpha bundlesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: Glyco_hydro_98CECOD (develop294)
BGlyco_hydro_98Ce7phrB01 A: alpha bundlesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: Glyco_hydro_98CECOD (develop294)
CGlyco_hydro_98Ce7phrC01 A: alpha bundlesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: Glyco_hydro_98CECOD (develop294)
DGlyco_hydro_98Ce7phrD01 A: alpha bundlesX: Rossmann-likeH: all-alpha NTP pyrophosphatasesT: Hypothetical protein AF_0060F: Glyco_hydro_98CECOD (develop294)
J [auth e]e7phre1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
Ee7phrE1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
F [auth H]e7phrH1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
K [auth z]e7phrz1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
I [auth Z]e7phrZ1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)
G [auth L]e7phrL1 A: alpha bundlesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F:ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth H]3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (utative)
F [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16680T-cell surface glycoprotein CD3 delta chain (Ig_4)T-cell surface glycoprotein CD3 delta chainThis is an immunoglobulin-like domain. It is found on the T-cell surface glycoprotein CD3 delta chain. CD3delta and CD3epsilon complex together as part of the T-cell receptor complex [1]. Domain
PF16680T-cell surface glycoprotein CD3 delta chain (Ig_4)T-cell surface glycoprotein CD3 delta chainThis is an immunoglobulin-like domain. It is found on the T-cell surface glycoprotein CD3 delta chain. CD3delta and CD3epsilon complex together as part of the T-cell receptor complex [1]. Domain
E,
J [auth e]
PF16681Ig-like domain on T-cell surface glycoprotein CD3 epsilon chain (Ig_5)Ig-like domain on T-cell surface glycoprotein CD3 epsilon chainIg_5 is an immunoglobulin domain found on T-cell surface glycoprotein CD3 epsilon chain. It forms a first-order complex with T-cell surface glycoprotein CD3 delta chain as part of the T-cell receptor complex [1]. Domain
F [auth H]PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
F [auth H]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
I [auth Z],
K [auth z]
PF11628T-cell surface glycoprotein CD3 zeta chain (TCR_zetazeta)T-cell surface glycoprotein CD3 zeta chain- Family
G [auth L]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
T-cell receptor alpha chain---
T-cell receptor beta chain---
T-cell surface glycoprotein CD3 gamma chain
T-cell surface glycoprotein CD3 delta chain, green fluorescent protein
E,
J [auth e]
T-cell surface glycoprotein CD3 epsilon chain
F [auth H]HLA class I histocompatibility antigen, A alpha chain
H [auth P]Tumor-associated antigentic peptide gp100
I [auth Z],
K [auth z]
T-cell surface glycoprotein CD3 zeta chain
G [auth L]Beta-2-microglobulin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003598Immunoglobulin subtype 2Domain
IPR032052CD3 gamma/delta subunit, Ig-like domainDomain
IPR015484CD3 protein, epsilon/gamma/delta subunitFamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR003110Phosphorylated immunoreceptor signalling ITAMRepeat
IPR032052CD3 gamma/delta subunit, Ig-like domainDomain
IPR015484CD3 protein, epsilon/gamma/delta subunitFamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR003110Phosphorylated immunoreceptor signalling ITAMRepeat
IPR000786Green fluorescent protein, GFPFamily
IPR011584Green fluorescent protein-relatedFamily
IPR009017Green fluorescent proteinHomologous Superfamily
E,
J [auth e]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E,
J [auth e]
IPR013783Immunoglobulin-like foldHomologous Superfamily
E,
J [auth e]
IPR003110Phosphorylated immunoreceptor signalling ITAMRepeat
E,
J [auth e]
IPR003598Immunoglobulin subtype 2Domain
E,
J [auth e]
IPR015484CD3 protein, epsilon/gamma/delta subunitFamily
F [auth H]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
F [auth H]IPR010579MHC class I, alpha chain, C-terminalDomain
F [auth H]IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
F [auth H]IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
F [auth H]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
F [auth H]IPR013783Immunoglobulin-like foldHomologous Superfamily
F [auth H]IPR007110Immunoglobulin-like domainDomain
F [auth H]IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
F [auth H]IPR003597Immunoglobulin C1-setDomain
F [auth H]IPR011161MHC class I-like antigen recognition-likeDomain
F [auth H]IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
H [auth P]IPR022409PKD/Chitinase domainDomain
H [auth P]IPR000601PKD domainDomain
H [auth P]IPR045219PKD- and KLD-Associated TransmembraneFamily
H [auth P]IPR035986PKD domain superfamilyHomologous Superfamily
H [auth P]IPR013783Immunoglobulin-like foldHomologous Superfamily
H [auth P]IPR046846PKAT, KLD domainDomain
H [auth P]IPR059017PMEL/NMB, N-terminal domainDomain
I [auth Z],
K [auth z]
IPR024128T-cell surface glycoprotein CD3 zeta subunitFamily
I [auth Z],
K [auth z]
IPR003110Phosphorylated immunoreceptor signalling ITAMRepeat
I [auth Z],
K [auth z]
IPR021663T-cell surface glycoprotein CD3 zeta subunit/High affinity IgE receptor gamma subunitFamily
G [auth L]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
G [auth L]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
G [auth L]IPR013783Immunoglobulin-like foldHomologous Superfamily
G [auth L]IPR007110Immunoglobulin-like domainDomain
G [auth L]IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
G [auth L]IPR003597Immunoglobulin C1-setDomain
G [auth L]IPR015707Beta-2-MicroglobulinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP09693
PharosP04234
E,
J [auth e]
PharosP07766
F [auth H]PharosP04439
H [auth P]PharosP40967
I [auth Z],
K [auth z]
PharosP20963
G [auth L]PharosP61769