7PEQ | pdb_00007peq

Model of the outer rings of the human nuclear pore complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Q [auth BJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
Q [auth BJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
Z [auth CJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
Z [auth CJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
IA [auth DJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
IA [auth DJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
H [auth AJ]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090976 3000456 SCOP2B (2022-06-29)
H [auth AJ]SCOP2B SuperfamilyScaffolding nucleoporins 8090984 3002255 SCOP2B (2022-06-29)
X [auth CH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
O [auth BH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
GA [auth DH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
F [auth AH]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054125 3002276 SCOP2B (2022-06-29)
DA [auth DE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
L [auth BE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
U [auth CE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
C [auth AE]SCOP2B SuperfamilyCoat and nuclear envelope proteins 8054128 3002276 SCOP2B (2022-06-29)
BA [auth DC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
J [auth BC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
S [auth CC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)
A [auth AC]SCOP2B SuperfamilyScaffolding nucleoporins 8090957 3002255 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HA [auth DI]ANAPC4_WD40_2e7peqDI1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_2ECOD (1.6)
P [auth BI]ANAPC4_WD40_2e7peqBI1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_2ECOD (1.6)
Y [auth CI]ANAPC4_WD40_2e7peqCI1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_2ECOD (1.6)
G [auth AI]ANAPC4_WD40_2e7peqAI1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_2ECOD (1.6)
Q [auth BJ]Nup160e7peqBJ2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nup160ECOD (1.6)
Q [auth BJ]KOG4521_1ste7peqBJ3 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: KOG4521_1stECOD (1.6)
Q [auth BJ]KOG4521_2nde7peqBJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: KOG4521_2ndECOD (1.6)
Z [auth CJ]Nup160e7peqCJ2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nup160ECOD (1.6)
Z [auth CJ]KOG4521_1ste7peqCJ3 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: KOG4521_1stECOD (1.6)
Z [auth CJ]KOG4521_2nde7peqCJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: KOG4521_2ndECOD (1.6)
IA [auth DJ]Nup160e7peqDJ2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nup160ECOD (1.6)
IA [auth DJ]KOG4521_1ste7peqDJ3 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: KOG4521_1stECOD (1.6)
IA [auth DJ]KOG4521_2nde7peqDJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: KOG4521_2ndECOD (1.6)
H [auth AJ]Nup160e7peqAJ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nup160ECOD (1.6)
H [auth AJ]KOG4521_1ste7peqAJ3 A: alpha arraysX: Nucleoporin NUP120 helical domain (From Topology)H: Nucleoporin NUP120 helical domain (From Topology)T: Nucleoporin NUP120 helical domainF: KOG4521_1stECOD (1.6)
H [auth AJ]KOG4521_2nde7peqAJ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: KOG4521_2ndECOD (1.6)
AA [auth CK]ANAPC4_WD40_10e7peqCK1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
I [auth AK]ANAPC4_WD40_10e7peqAK1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
R [auth BK]ANAPC4_WD40_10e7peqBK1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
JA [auth DK]ANAPC4_WD40_10e7peqDK1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
X [auth CH]Nucleopor_Nup85e7peqCH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
O [auth BH]Nucleopor_Nup85e7peqBH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
GA [auth DH]Nucleopor_Nup85e7peqDH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
F [auth AH]Nucleopor_Nup85e7peqAH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nucleopor_Nup85ECOD (1.6)
E [auth AG]ANAPC4_WD40_6e7peqAG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
FA [auth DG]ANAPC4_WD40_6e7peqDG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
W [auth CG]ANAPC4_WD40_6e7peqCG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
N [auth BG]ANAPC4_WD40_6e7peqBG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
EA [auth DF]ANAPC4_WD40_4e7peqDF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
V [auth CF]ANAPC4_WD40_4e7peqCF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
M [auth BF]ANAPC4_WD40_4e7peqBF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
D [auth AF]ANAPC4_WD40_4e7peqAF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
DA [auth DE]Nup96e7peqDE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nup96ECOD (1.6)
L [auth BE]Nup96e7peqBE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nup96ECOD (1.6)
U [auth CE]Nup96e7peqCE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nup96ECOD (1.6)
C [auth AE]Nup96e7peqAE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology)T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: Nup96ECOD (1.6)
B [auth AD]Nup84_Nup100e7peqAD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: Nup84_Nup100ECOD (1.6)
CA [auth DD]Nup84_Nup100e7peqDD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: Nup84_Nup100ECOD (1.6)
T [auth CD]Nup84_Nup100e7peqCD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: Nup84_Nup100ECOD (1.6)
K [auth BD]Nup84_Nup100e7peqBD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nucleoporin Nup84/Nup107 (From Topology)T: Nucleoporin Nup84/Nup107F: Nup84_Nup100ECOD (1.6)
BA [auth DC]Nucleoporin_C_Ce7peqDC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
J [auth BC]Nucleoporin_C_Ce7peqBC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
S [auth CC]Nucleoporin_C_Ce7peqCC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
A [auth AC]Nucleoporin_C_Ce7peqAC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
PF12110Nuclear protein 96 (Nup96)Nuclear protein 96Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ...Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex. [1] [2]
Domain
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Family
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
PF03177Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)Non-repetitive/WGA-negative nucleoporin C-terminal- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
Nucleoporin Nup43-
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
Nuclear pore complex protein Nup160
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
Nucleoporin Nup37-
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
Nuclear pore complex protein Nup85
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
Nucleoporin SEH1
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
Protein SEC13 homolog
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
Nuclear pore complex protein Nup96
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
Nuclear pore complex protein Nup107
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
Nuclear pore complex protein Nup133

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR019775WD40 repeat, conserved siteConserved Site
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR001680WD40 repeatRepeat
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR021717Nucleoporin Nup120/160Family
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR056547NUP160, helical domainDomain
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR056535NUP160, middle TPR domainDomain
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
IPR056536NUP160, C-terminal TPR domainDomain
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR019775WD40 repeat, conserved siteConserved Site
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR037626Nucleoporin Nup37Family
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR001680WD40 repeatRepeat
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
IPR011502Nucleoporin Nup85-likeFamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR037363Sec13/Seh1 familyFamily
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
IPR001680WD40 repeatRepeat
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR037363Sec13/Seh1 familyFamily
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
IPR001680WD40 repeatRepeat
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR037665Nucleoporin peptidase S59-likeFamily
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
IPR007252Nuclear pore protein 84/107Family
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
IPR037624Nuclear pore complex protein Nup133-likeFamily
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
G [auth AI],
HA [auth DI],
P [auth BI],
Y [auth CI]
PharosQ8NFH3
H [auth AJ],
IA [auth DJ],
Q [auth BJ],
Z [auth CJ]
PharosQ12769
AA [auth CK],
I [auth AK],
JA [auth DK],
R [auth BK]
PharosQ8NFH4
F [auth AH],
GA [auth DH],
O [auth BH],
X [auth CH]
PharosQ9BW27
E [auth AG],
FA [auth DG],
N [auth BG],
W [auth CG]
PharosQ96EE3
D [auth AF],
EA [auth DF],
M [auth BF],
V [auth CF]
PharosP55735
C [auth AE],
DA [auth DE],
L [auth BE],
U [auth CE]
PharosP52948
B [auth AD],
CA [auth DD],
K [auth BD],
T [auth CD]
PharosP57740
A [auth AC],
BA [auth DC],
J [auth BC],
S [auth CC]
PharosQ8WUM0