7PEC

cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)8036936 3001600 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]PF00400e7pecC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
D [auth I]F_UNCLASSIFIEDe7pecI2 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: F_UNCLASSIFIEDECOD (1.6)
D [auth I]PF00610e7pecI3 A: alpha arraysX: HTHH: HTHT: wingedF: PF00610ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02260FATC domain (FATC)FATC domain- Family
PF08771FKBP12-rapamycin binding domain (FRB_dom)FKBP12-rapamycin binding domainThe macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].
Domain
PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
PF11865Domain of unknown function (DUF3385) (DUF3385)Domain of unknown function (DUF3385)- Repeat
PF02259FAT domain (FAT)FAT domain- Repeat
B [auth C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth E]PF14538Raptor N-terminal CASPase like domain (Raptor_N)Raptor N-terminal CASPase like domainThis domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity.Domain
C [auth E]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
C [auth E]PF02985HEAT repeat (HEAT)HEAT repeat- Repeat
D [auth I]PF00610Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) (DEP)Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) prot ...The DEP domain [1] is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell [2-3]. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting [4-5]. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit [6-7].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Serine/threonine-protein kinase mTOR
B [auth C]Target of rapamycin complex subunit LST8
C [auth E]Regulatory-associated protein of mTOR
D [auth I]DEP domain-containing mTOR-interacting protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016024Armadillo-type foldHomologous Superfamily
IPR009076FKBP12-rapamycin binding domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR018936Phosphatidylinositol 3/4-kinase, conserved siteConserved Site
IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
IPR014009PIK-related kinaseDomain
IPR026683Serine/threonine-protein kinase TOR, catalytic domainDomain
IPR003151PIK-related kinase, FATDomain
IPR036738FKBP12-rapamycin binding domain superfamilyHomologous Superfamily
IPR003152FATC domainDomain
IPR024585Serine/threonine-protein kinase mTOR domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
B [auth C]IPR019775WD40 repeat, conserved siteConserved Site
B [auth C]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
B [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth C]IPR001680WD40 repeatRepeat
B [auth C]IPR037588Target of rapamycin complex subunit LST8Family
B [auth C]IPR020472G-protein beta WD-40 repeatRepeat
C [auth E]IPR016024Armadillo-type foldHomologous Superfamily
C [auth E]IPR004083Regulatory associated protein of TORFamily
C [auth E]IPR029347Raptor, N-terminal CASPase-like domainDomain
C [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth E]IPR000357HEAT repeatRepeat
C [auth E]IPR011989Armadillo-like helicalHomologous Superfamily
C [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C [auth E]IPR001680WD40 repeatRepeat
D [auth I]IPR000591DEP domainDomain
D [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
D [auth I]IPR037336DEP domain-containing mTOR-interacting protein, DEP domain 2Domain
D [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
D [auth I]IPR036034PDZ superfamilyHomologous Superfamily
D [auth I]IPR037335DEP domain-containing mTOR-interacting protein, DEP domain 1Domain
D [auth I]IPR001478PDZ domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP42345
B [auth C]PharosQ9BVC4
C [auth E]PharosQ8N122
D [auth I]PharosQ8TB45