7PE8 | pdb_00007pe8

cryo-EM structure of DEPTOR bound to human mTOR complex 2, focussed on one protomer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 8036936 3001600 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth I]PDZe7pe8I1 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZECOD (1.6)
B [auth C]ANAPC4_WD40_5e7pe8C1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_5ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth G]PF05422Stress-activated map kinase interacting protein 1 (SIN1) (SIN1)Stress-activated map kinase interacting protein 1 (SIN1)- Family
D [auth G]PF16978SAPK-interacting protein 1 (Sin1), middle CRIM domain (CRIM)SAPK-interacting protein 1 (Sin1), middle CRIM domain- Family
C [auth E]PF14663Rapamycin-insensitive companion of mTOR RasGEF_N domain (RasGEF_N_2)Rapamycin-insensitive companion of mTOR RasGEF_N domainRictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. This region is the more conserved central section that may include several individual domains. Rictor can be inhibited in the short-term by rapamycin.
Domain
C [auth E]PF14664Rapamycin-insensitive companion of mTOR, N-term (RICTOR_N)Rapamycin-insensitive companion of mTOR, N-termRictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. This region is the N-terminal conserved section that may include several individual domains. Rictor can be inhibited in the short-term by rapamycin.
Domain
C [auth E]PF14666Rapamycin-insensitive companion of mTOR, middle domain (RICTOR_M)Rapamycin-insensitive companion of mTOR, middle domainRictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. This region is the more conserved central section that may include several individual domains. Rictor can be inhibited in the short-term by rapamycin.
Domain
C [auth E]PF14668Rapamycin-insensitive companion of mTOR, domain 5 (RICTOR_V)Rapamycin-insensitive companion of mTOR, domain 5Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important f ...Rictor appears to serve as a scaffolding protein that is important for maintaining mTORC2 integrity. The mammalian target of rapamycin (mTOR) is a conserved Ser/Thr kinase that forms two functionally distinct complexes, mTROC1 and mTORC2, important for nutrient and growth-factor signalling. These long eukaryotic proteins carry several well-conserved domains, and this is No.5.
Domain
B [auth C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF02260FATC domain (FATC)FATC domain- Family
PF08771FKBP12-rapamycin binding domain (FRB_dom)FKBP12-rapamycin binding domainThe macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].
Domain
PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
PF11865Serine/threonine-protein kinase mTOR domain (mTOR_dom)Serine/threonine-protein kinase mTOR domain- Repeat
PF02259FAT domain (FAT)FAT domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth I]DEP domain-containing mTOR-interacting protein
D [auth G]Target of rapamycin complex 2 subunit MAPKAP1
C [auth E]Rapamycin-insensitive companion of mTOR
B [auth C]Target of rapamycin complex subunit LST8
Serine/threonine-protein kinase mTOR

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth I]IPR000591DEP domainDomain
E [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
E [auth I]IPR037336DEP domain-containing mTOR-interacting protein, DEP domain 2Domain
E [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
E [auth I]IPR036034PDZ superfamilyHomologous Superfamily
E [auth I]IPR037335DEP domain-containing mTOR-interacting protein, DEP domain 1Domain
E [auth I]IPR051832Regulators of mTOR signaling and Rac activationFamily
E [auth I]IPR001478PDZ domainDomain
D [auth G]IPR032679Sin1, N-terminalDomain
D [auth G]IPR031313SAPK-interacting protein 1, Pleckstrin-homology domainDomain
D [auth G]IPR011993PH-like domain superfamilyHomologous Superfamily
D [auth G]IPR031567Sin1, middle CRIM domainDomain
D [auth G]IPR008828TORC2 component Sin1/Avo1Family
C [auth E]IPR028267Rapamycin-insensitive companion of mTOR, N-terminal domainDomain
C [auth E]IPR029451Rapamycin-insensitive companion of mTOR, middle domainDomain
C [auth E]IPR016024Armadillo-type foldHomologous Superfamily
C [auth E]IPR029259Rapamycin-insensitive companion of mTOR, phosphorylation-sitePTM
C [auth E]IPR029453Rapamycin-insensitive companion of mTOR, domain 4Domain
C [auth E]IPR029452Rapamycin-insensitive companion of mTOR, domain 5Domain
C [auth E]IPR028268Pianissimo familyFamily
B [auth C]IPR019775WD40 repeat, conserved siteConserved Site
B [auth C]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
B [auth C]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
B [auth C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth C]IPR001680WD40 repeatRepeat
B [auth C]IPR037588Target of rapamycin complex subunit LST8Family
IPR016024Armadillo-type foldHomologous Superfamily
IPR009076FKBP12-rapamycin binding domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
IPR014009PIK-related kinase, FAT domainDomain
IPR026683Serine/threonine-protein kinase TOR, catalytic domainDomain
IPR003151PIK-related kinase, FATDomain
IPR036738FKBP12-rapamycin binding domain superfamilyHomologous Superfamily
IPR003152FATC domainDomain
IPR024585Serine/threonine-protein kinase mTOR domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
IPR050517DNA Damage Response and Repair KinaseFamily
IPR018936Phosphatidylinositol 3-/4-kinase, conserved siteConserved Site
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth I]PharosQ8TB45
D [auth G]PharosQ9BPZ7
C [auth E]PharosQ6R327
B [auth C]PharosQ9BVC4
PharosP42345