7PAA | pdb_00007paa

JC polyomavirus VP1 in complex with scFv 29B1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
J [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
I [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
H [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
G [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
F [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
E [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
D [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
C [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
B [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth JJJ]	Polyoma_coat	e7paaJJJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
J [auth III]	Polyoma_coat	e7paaIII1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
I [auth HHH]	Polyoma_coat	e7paaHHH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
H [auth GGG]	Polyoma_coat	e7paaGGG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
G [auth FFF]	Polyoma_coat	e7paaFFF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
F [auth EEE]	Polyoma_coat	e7paaEEE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
E [auth DDD]	Polyoma_coat	e7paaDDD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
D [auth CCC]	Polyoma_coat	e7paaCCC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
C [auth BBB]	Polyoma_coat	e7paaBBB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
B [auth AAA]	Polyoma_coat	e7paaAAA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
T [auth YYY]	V-set_3	e7paaYYY2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
S [auth XXX]	V-set_3	e7paaXXX2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
S [auth XXX]	V-set_12	e7paaXXX1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
R [auth WWW]	V-set_3	e7paaWWW1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
Q [auth eee]	V-set_3	e7paaeee2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
P [auth ddd]	V-set_3	e7paaddd1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
O [auth ccc]	V-set_3	e7paaccc1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
M [auth aaa]	V-set_3	e7paaaaa2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	Major capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth ZZZ], L [auth KKK], M [auth aaa], N [auth bbb], O [auth ccc], A [auth ZZZ], L [auth KKK], M [auth aaa], N [auth bbb], O [auth ccc], P [auth ddd], Q [auth eee], R [auth WWW], S [auth XXX], T [auth YYY]	scFv 29B1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], B [auth AAA], C [auth BBB], D [auth CCC], E [auth DDD], F [auth EEE], G [auth FFF], H [auth GGG], I [auth HHH], J [auth III], K [auth JJJ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.