7P5H | pdb_00007p5h

TmHydABC- D2 map


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth f]Fe_hyd_lg_Ce7p5hf1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
I [auth c]Fe_hyd_lg_Ce7p5hc1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
FFe_hyd_lg_Ce7p5hF1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
CFe_hyd_lg_Ce7p5hC1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
K [auth e]Fe_hyd_lg_Ce7p5he1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
H [auth b]Fe_hyd_lg_Ce7p5hb1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
EFe_hyd_lg_Ce7p5hE1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
BFe_hyd_lg_Ce7p5hB1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
J [auth d]Fe_hyd_lg_Ce7p5hd1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
G [auth a]Fe_hyd_lg_Ce7p5ha1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
DFe_hyd_lg_Ce7p5hD1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)
AFe_hyd_lg_Ce7p5hA1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: Fe_hyd_lg_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth e]3.40.50.11540 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NADH-ubiquinone oxidoreductase 51kDa subunitCATH (utative)
K [auth e]3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
K [auth e]1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
H [auth b]3.40.50.11540 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NADH-ubiquinone oxidoreductase 51kDa subunitCATH (utative)
H [auth b]3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
H [auth b]1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
E3.40.50.11540 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NADH-ubiquinone oxidoreductase 51kDa subunitCATH (utative)
E3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
E1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)
B3.40.50.11540 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NADH-ubiquinone oxidoreductase 51kDa subunitCATH (utative)
B3.10.20.600 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (utative)
B1.20.1440.230 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C,
F,
I [auth c],
L [auth f]
PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
B,
E,
H [auth b],
K [auth e]
PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
B,
E,
H [auth b],
K [auth e]
PF01512Nuo51 FMN-binding domain (Complex1_51K)Nuo51 FMN-binding domainThis entry represents the FMN-binding domain of NADH-ubiquinone oxidoreductase 51kDa subunit from NADH:ubiquinone oxidoreductase. Domain
B,
E,
H [auth b],
K [auth e]
PF10589NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)NADH-ubiquinone oxidoreductase-F iron-sulfur binding regionDomain
A,
D,
G [auth a],
J [auth d]
PF02906Iron only hydrogenase large subunit, C-terminal domain (Fe_hyd_lg_C)Iron only hydrogenase large subunit, C-terminal domainDomain
A,
D,
G [auth a],
J [auth d]
PF02256Iron hydrogenase small subunit (Fe_hyd_SSU)Iron hydrogenase small subunitThis family represents the small subunit of the Fe-only hydrogenases EC:1.18.99.1. The subunit is comprised of alternating random coil and alpha helical structures that encompasses the large subunit in a novel protein fold [1]. Domain
A,
D,
G [auth a],
J [auth d]
PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domainDomain
A,
D,
G [auth a],
J [auth d]
PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain
A,
D,
G [auth a],
J [auth d]
PF10588NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3)NADH-ubiquinone oxidoreductase-G iron-sulfur binding regionDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C,
F,
I [auth c],
L [auth f]
Fe-hydrogenase, subunit gamma -
B,
E,
H [auth b],
K [auth e]
Fe-hydrogenase, subunit beta -
A,
D,
G [auth a],
J [auth d]
Fe-hydrogenase, subunit alpha

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C,
F,
I [auth c],
L [auth f]
IPR028431NADP-reducing hydrogenase subunit HndA-likeFamily
C,
F,
I [auth c],
L [auth f]
IPR042128NuoE domainDomain
C,
F,
I [auth c],
L [auth f]
IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
C,
F,
I [auth c],
L [auth f]
IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
C,
F,
I [auth c],
L [auth f]
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
B,
E,
H [auth b],
K [auth e]
IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
B,
E,
H [auth b],
K [auth e]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
B,
E,
H [auth b],
K [auth e]
IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
B,
E,
H [auth b],
K [auth e]
IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
B,
E,
H [auth b],
K [auth e]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
B,
E,
H [auth b],
K [auth e]
IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
B,
E,
H [auth b],
K [auth e]
IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
B,
E,
H [auth b],
K [auth e]
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
A,
D,
G [auth a],
J [auth d]
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
A,
D,
G [auth a],
J [auth d]
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
A,
D,
G [auth a],
J [auth d]
IPR009016Iron hydrogenaseHomologous Superfamily
A,
D,
G [auth a],
J [auth d]
IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
A,
D,
G [auth a],
J [auth d]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
A,
D,
G [auth a],
J [auth d]
IPR004108Iron hydrogenase, large subunit, C-terminalDomain
A,
D,
G [auth a],
J [auth d]
IPR050340Cytosolic Fe-S Cluster Assembly FactorFamily
A,
D,
G [auth a],
J [auth d]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
A,
D,
G [auth a],
J [auth d]
IPR003149Iron hydrogenase, small subunitDomain
A,
D,
G [auth a],
J [auth d]
IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain
A,
D,
G [auth a],
J [auth d]
IPR036249Thioredoxin-like superfamilyHomologous Superfamily