7OZS | pdb_00007ozs

Structure of the hexameric 5S RNP from C. thermophilum


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth A]SCOP2B SuperfamilyTranslational machinery components 8106194 3000571 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyRL5-like 8077505 3001709 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth F]e7ozsF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: V-setF:ECOD (20:10:01)
D [auth C]e7ozsC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: V-setF:ECOD (20:10:01)
C [auth D]e7ozsD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: V-setF:ECOD (20:10:01)
B [auth A]e7ozsA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: V-setF:ECOD (20:10:01)
A [auth B]e7ozsB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: V-setF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth A]3.30.420.100 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth F]PF25567SYO1-like, TPR repeats (TPR_SYO1)SYO1-like, TPR repeats- Repeat
D [auth C]PF04427Brix domain (Brix)Brix domainDomain
C [auth D]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
B [auth A]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
B [auth A]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
A [auth B]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth F]Syo1 -
F [auth E]unknown---
E [auth 3]5S rRNA---
D [auth C]Ribosome production factor 2 homolog
C [auth D]Ribosome biogenesis regulatory protein-
B [auth A]60S ribosomal protein l5-like protein
A [auth B]Putative ribosomal protein