7OYD
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
K [auth C] | SCOP2B Superfamily | Ribosomal protein L4 | 8052829 | 3001146 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052828 | 3002143 | SCOP2B (2022-06-29) |
M [auth Cc] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095265 | 3000135 | SCOP2B (2022-06-29) |
P [auth Dd] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052584 | 3000068 | SCOP2B (2022-06-29) |
R [auth EE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052746 | 3000135 | SCOP2B (2022-06-29) |
R [auth EE] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052745 | 3001473 | SCOP2B (2022-06-29) |
R [auth EE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052747 | 3000334 | SCOP2B (2022-06-29) |
S [auth Ee] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053455 | 3002190 | SCOP2B (2022-06-29) |
U [auth FF] | SCOP2B Superfamily | Ribosomal protein S7 | 8066001 | 3000799 | SCOP2B (2022-06-29) |
AA [auth I] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8097320 | 3000884 | SCOP2B (2022-06-29) |
BA [auth II] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053075 | 3000433 | SCOP2B (2022-06-29) |
CA [auth J] | SCOP2B Superfamily | RL5-like | 8073894 | 3001709 | SCOP2B (2022-06-29) |
FA [auth KK] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055720 | 3000034 | SCOP2B (2022-06-29) |
HA [auth LL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052707 | 3000135 | SCOP2B (2022-06-29) |
HA [auth LL] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052708 | 3002138 | SCOP2B (2022-06-29) |
JA [auth N] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082477 | 3000210 | SCOP2B (2022-06-29) |
KA [auth NN] | SCOP2B Superfamily | Homeodomain-like | 8052970 | 3000001 | SCOP2B (2022-06-29) |
KA [auth NN] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052971 | 3001284 | SCOP2B (2022-06-29) |
QA [auth QQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082683 | 3000100 | SCOP2B (2022-06-29) |
RA [auth R] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8107568 | 3000890 | SCOP2B (2022-06-29) |
UA [auth SS] | SCOP2B Superfamily | S13-like H2TH domain | 8101439 | 3000053 | SCOP2B (2022-06-29) |
WA [auth TT] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089322 | 3000034 | SCOP2B (2022-06-29) |
YA [auth UU] | SCOP2B Superfamily | Ribosomal protein S10 | 8097814 | 3001336 | SCOP2B (2022-06-29) |
ZA [auth V] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072048 | 3000433 | SCOP2B (2022-06-29) |
CB [auth WW] | SCOP2B Superfamily | Ribosomal protein S8 | 8079081 | 3000709 | SCOP2B (2022-06-29) |
FB [auth Y] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076754 | 3000334 | SCOP2B (2022-06-29) |
F [auth AA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8097826 | 3001397 | SCOP2B (2022-06-29) |
HB [auth Z] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053047 | 3000334 | SCOP2B (2022-06-29) |
IB [auth ZZ] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090991 | 3000034 | SCOP2B (2022-06-29) |
JB [auth a] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8097818 | 3001045 | SCOP2B (2022-06-29) |
LB [auth c] | SCOP2B Superfamily | L30e-like | 8094953 | 3001739 | SCOP2B (2022-06-29) |
NB [auth e] | SCOP2B Superfamily | Ribosomal protein L32e | 8102088 | 3000982 | SCOP2B (2022-06-29) |
OB [auth f] | SCOP2B Superfamily | Translational proteins | 8093714 | 3000811 | SCOP2B (2022-06-29) |
PB [auth g] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8103328 | 3002203 | SCOP2B (2022-06-29) |
RB [auth i] | SCOP2B Superfamily | Ribosomal protein L36e | 8053119 | 3002161 | SCOP2B (2022-06-29) |
TB [auth k] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8093716 | 3002206 | SCOP2B (2022-06-29) |
UB [auth l] | SCOP2B Superfamily | Ribosomal protein L39e | 8095597 | 3001756 | SCOP2B (2022-06-29) |
YB [auth p] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101435 | 3001320 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | Translational proteins | 8078357 | 3000811 | SCOP2B (2022-06-29) |
I [auth BB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053216 | 3002166 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth x] | Ribosomal_L1_2nd_1 | e7oydx2 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
A [auth x] | Ribosomal_L1_1st_1 | e7oydx1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
J [auth Bb] | Ribosomal_S27e | e7oydBb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
K [auth C] | Ribosomal_L4 | e7oydC1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
K [auth C] | Ribos_L4_asso_C | e7oydC2 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (1.6) |
L [auth CC] | Ribosomal_S5_C_1 | e7oydCC1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C_1 | ECOD (1.6) |
L [auth CC] | Ribosomal_S5_3 | e7oydCC2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5_3 | ECOD (1.6) |
L [auth CC] | Ribosomal_S5_2 | e7oydCC3 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: Ribosomal_S5_2 | ECOD (1.6) |
M [auth Cc] | Ribosomal_S28e | e7oydCc1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
N [auth D] | Ribosomal_L5e | e7oydD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
O [auth DD] | Ribosomal_S3_C | e7oydDD2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
O [auth DD] | KH_2_3 | e7oydDD1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
P [auth Dd] | Ribosomal_S14_2 | e7oydDd1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
Q [auth E] | Ribosomal_L6e | e7oydE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L6e | ECOD (1.6) |
R [auth EE] | Ribosomal_S4e | e7oydEE2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S4e | ECOD (1.6) |
R [auth EE] | 40S_S4_C | e7oydEE3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 40S_S4_C | ECOD (1.6) |
R [auth EE] | RS4NT | e7oydEE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
S [auth Ee] | Ribosomal_S30 | e7oydEe1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: Ribosomal_S30 | ECOD (1.6) |
T [auth F] | Ribosomal_L30_1 | e7oydF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
U [auth FF] | Ribosomal_S7_1 | e7oydFF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
V [auth G] | Ribosomal_L7Ae_1 | e7oydG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
W [auth GG] | Ribosomal_S6e | e7oydGG1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
X [auth Gg] | DUF1899 | e7oydGg1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DUF1899 | ECOD (1.6) |
Y [auth H] | Ribosomal_L6_2 | e7oydH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
Y [auth H] | Ribosomal_L6 | e7oydH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
Z [auth HH] | Ribosomal_S7e_N | e7oydHH2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_N | ECOD (1.6) |
Z [auth HH] | Ribosomal_S7e_C_1 | e7oydHH1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_C_1 | ECOD (1.6) |
AA [auth I] | Ribosomal_L16 | e7oydI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
BA [auth II] | Ribosomal_S8e | e7oydII1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
CA [auth J] | Ribosomal_L5_C | e7oydJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
DA [auth JJ] | S4 | e7oydJJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
FA [auth KK] | S10_plectin | e7oydKK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
GA [auth L] | Ribosomal_L13e | e7oydL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: Ribosomal_L13e | ECOD (1.6) |
HA [auth LL] | Ribosomal_S17_1 | e7oydLL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
IA [auth M] | Ribosomal_L14e | e7oydM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
JA [auth N] | Ribosomal_L15e | e7oydN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
KA [auth NN] | Ribosomal_S13_N | e7oydNN1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (1.6) |
KA [auth NN] | Ribosomal_S15_2 | e7oydNN2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
LA [auth O] | Ribosomal_L13 | e7oydO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
MA [auth OO] | Ribosomal_S11 | e7oydOO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
NA [auth P] | Ribosomal_L22 | e7oydP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
OA [auth PP] | Ribosomal_S19 | e7oydPP1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
PA [auth Q] | Ribosomal_L18 | e7oydQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
QA [auth QQ] | Ribosomal_S9 | e7oydQQ1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
RA [auth R] | Ribosomal_L19e_N | e7oydR2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
RA [auth R] | Ribosomal_L19e_C | e7oydR1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
SA [auth RR] | Ribosomal_S17e | e7oydRR1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
TA [auth S] | Ribosomal_L18A | e7oydS2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
UA [auth SS] | Ribosomal_S13 | e7oydSS1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
VA [auth T] | Ribosomal_L21e | e7oydT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
WA [auth TT] | Ribosomal_S19e | e7oydTT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
E [auth A] | Ribosomal_L2_1 | e7oydA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
E [auth A] | Ribosomal_L2_C_2 | e7oydA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
XA [auth U] | Ribosomal_L22e | e7oydU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: Ribosomal_L22e | ECOD (1.6) |
YA [auth UU] | Ribosomal_S10_1 | e7oydUU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
ZA [auth V] | Ribosomal_L14 | e7oydV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
AB [auth VV] | Ribosomal_S21e | e7oydVV1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: Ribosomal_S21e | ECOD (1.6) |
BB [auth W] | Ribosomal_L24e | e7oydW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
CB [auth WW] | Ribosomal_S8_N_1 | e7oydWW2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
CB [auth WW] | Ribosomal_S8_C_1 | e7oydWW1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
DB [auth X] | Ribosomal_L23_3 | e7oydX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_3 | ECOD (1.6) |
EB [auth XX] | Ribosom_S12_S23 | e7oydXX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
FB [auth Y] | Ribosomal_L26 | e7oydY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
GB [auth YY] | Ribosomal_S24e | e7oydYY1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
F [auth AA] | Ribosomal_S2_2 | e7oydAA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
HB [auth Z] | Ribosomal_L27e | e7oydZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L27e | ECOD (1.6) |
IB [auth ZZ] | Ribosomal_S25 | e7oydZZ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
JB [auth a] | Ribosomal_L18 | e7oyda1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
KB [auth b] | Ribosomal_L29e | e7oydb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: Ribosomal_L29e | ECOD (1.6) |
LB [auth c] | Ribosomal_L7Ae | e7oydc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
MB [auth d] | Ribosomal_L31e | e7oydd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
NB [auth e] | Ribosomal_L32e | e7oyde1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
OB [auth f] | Ribosomal_L35Ae | e7oydf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
PB [auth g] | Ribosomal_L34e | e7oydg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
QB [auth h] | Ribosomal_L29_2 | e7oydh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29_2 | ECOD (1.6) |
G [auth Aa] | Ribosomal_S26e | e7oydAa1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S26e | ECOD (1.6) |
RB [auth i] | Ribosomal_L36e | e7oydi1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: Ribosomal_L36e | ECOD (1.6) |
SB [auth j] | Ribosomal_L37e | e7oydj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
TB [auth k] | Ribosomal_L38e | e7oydk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: Ribosomal_L38e | ECOD (1.6) |
UB [auth l] | Ribosomal_L39 | e7oydl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
VB [auth m] | Ribosomal_L40e | e7oydm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L40e | ECOD (1.6) |
WB [auth n] | Ribosomal_L41 | e7oydn1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41 | ECOD (1.6) |
XB [auth o] | Ribosomal_L44 | e7oydo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
YB [auth p] | Ribosomal_L37ae | e7oydp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
ZB [auth r] | Ribosomal_L28e | e7oydr1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: Ribosomal_L28e | ECOD (1.6) |
AC [auth s] | Ribosomal_L10 | e7oyds1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: Ribosomal_L10 | ECOD (1.6) |
AC [auth s] | Ribosomal_P0_L10e | e7oyds2 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: Ribosomal_P0_L10e | ECOD (1.6) |
H [auth B] | Ribosomal_L3 | e7oydB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
CC [auth t] | eIF-5a | e7oydt1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: eIF-5a | ECOD (1.6) |
CC [auth t] | EFP_N_1 | e7oydt2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N_1 | ECOD (1.6) |
DC [auth v] | GTP_EFTU_D2 | e7oydv4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
DC [auth v] | EFG_IV | e7oydv2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: EFG_IV | ECOD (1.6) |
DC [auth v] | EFG_C | e7oydv3 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_C | ECOD (1.6) |
DC [auth v] | EFG_II | e7oydv5 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_II | ECOD (1.6) |
DC [auth v] | MnmE_helical_2nd | e7oydv1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
I [auth BB] | Ribosomal_S3Ae_N | e7oydBB1 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
I [auth BB] | Ribosomal_S3Ae_C | e7oydBB2 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
K [auth C] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
K [auth C] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
L [auth CC] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
N [auth D] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
O [auth DD] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
O [auth DD] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
O [auth DD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
Q [auth E] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
Q [auth E] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
R [auth EE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
R [auth EE] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
R [auth EE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
R [auth EE] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
T [auth F] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
T [auth F] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
T [auth F] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
U [auth FF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
W [auth GG] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
W [auth GG] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Y [auth H] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
Y [auth H] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
AA [auth I] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
AA [auth I] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
BA [auth II] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
CA [auth J] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
CA [auth J] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
CA [auth J] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
DA [auth JJ] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
DA [auth JJ] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
EA [auth K] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
FA [auth KK] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
GA [auth L] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
GA [auth L] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
HA [auth LL] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
HA [auth LL] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
IA [auth M] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
JA [auth N] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
JA [auth N] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
KA [auth NN] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
KA [auth NN] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
LA [auth O] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
NA [auth P] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
NA [auth P] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
OA [auth PP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
QA [auth QQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
RA [auth R] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
RA [auth R] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
UA [auth SS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
VA [auth T] | PF21485 | Translation initiation factor 5A-like, N-terminal (IF5A-like_N) | Translation initiation factor 5A-like, N-terminal | This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ... | Domain |
VA [auth T] | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a) | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1]. | Domain |
WA [auth TT] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
E [auth A] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
YA [auth UU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
ZA [auth V] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
BB [auth W] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
CB [auth WW] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
EB [auth XX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
FB [auth Y] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
FB [auth Y] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
GB [auth YY] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
F [auth AA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
F [auth AA] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
HB [auth Z] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
HB [auth Z] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
H [auth B] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
I [auth BB] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
K [auth C] | MLZ | Parent Component: LYS :  AA0076 :  N6-methyl-L-lysine MOD:00085 |
B [auth 5] | 1MA | Parent Component: A :  AA0076 |
B [auth 5] | 2MG | Parent Component: G :  AA0076 |
B [auth 5] | 5MC | Parent Component: C :  AA0076 |
B [auth 5] | 5MU | Parent Component: U :  AA0076 |
B [auth 5] | 6MZ | Parent Component: A :  AA0076 |
B [auth 5] | 7MG | Parent Component: G :  AA0076 |
B [auth 5] | A2M | Parent Component: A :  AA0076 |
B [auth 5] | B8H | Parent Component: U :  AA0076 |
B [auth 5] | B8K | Parent Component: G :  AA0076 |
B [auth 5] | B8Q | Parent Component: C |
B [auth 5] | B8T | Parent Component: C :  AA0076 |
B [auth 5] | B8W | Parent Component: G :  AA0076 |
B [auth 5] | B9B | Parent Component: G :  AA0076 |
B [auth 5] | B9H | Parent Component: C |
B [auth 5] | BGH | Parent Component: G :  AA0076 |
B [auth 5] | E6G | Parent Component: G :  AA0076 |
B [auth 5] | E7G | Parent Component: G :  AA0076 |
B [auth 5] | I4U | Parent Component: U :  AA0076 |
B [auth 5] | M7A | Parent Component: A :  AA0076 |
B [auth 5] | MHG | Parent Component: G :  AA0076 |
B [auth 5] | OMC | Parent Component: C :  AA0076 |
B [auth 5] | OMG | Parent Component: G :  AA0076 |
B [auth 5] | OMU | Parent Component: U :  AA0076 |
B [auth 5] | P4U | Parent Component: U :  AA0076 |
B [auth 5] | P7G | Parent Component: G :  AA0076 |
B [auth 5] | PSU | Parent Component: U :  AA0076 |
B [auth 5] | UR3 | Parent Component: U :  AA0076 |
C [auth 8] | OMU | Parent Component: U :  AA0076 |
D [auth 9] | 4AC | AA0076 | : 
D [auth 9] | 5MC | Parent Component: C :  AA0076 |
D [auth 9] | 5MU | Parent Component: U :  AA0076 |
D [auth 9] | 6MZ | Parent Component: A :  AA0076 |
D [auth 9] | A2M | Parent Component: A :  AA0076 |
D [auth 9] | B8N | AA0076 | : 
D [auth 9] | B8Q | Parent Component: C |
D [auth 9] | E3C | Parent Component: C |
D [auth 9] | M7A | Parent Component: A :  AA0076 |
D [auth 9] | MA6 | Parent Component: A :  AA0076 |
D [auth 9] | OMC | Parent Component: C :  AA0076 |
D [auth 9] | OMG | Parent Component: G :  AA0076 |
D [auth 9] | OMU | Parent Component: U :  AA0076 |
D [auth 9] | PSU | Parent Component: U :  AA0076 |
D [auth 9] | UR3 | Parent Component: U :  AA0076 |
VB [auth m] | MLZ | Parent Component: LYS :  AA0076 , AA0076 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 |
CC [auth t] | 5CT | Parent Component: LYS :  AA0076 , AA0076 |
DC [auth v] | DDE | Parent Component: HIS :  AA0076 , AA0076 , AA0040 :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049 |