7OY8 | pdb_00007oy8

Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X [auth R]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8103977	3000736	SCOP2B (2022-06-29)
S [auth L]	SCOP2 Family	Bacterial photosystem II reaction centre, L and M subunits	8104316	4002035	SCOP2 (2022-06-29)
S [auth L]	SCOP2 Superfamily	Bacterial photosystem II reaction centre, L and M subunits	8104317	3000736	SCOP2 (2022-06-29)
DA [auth X]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
H [auth 8]	SCOP2 Family	Light-harvesting complex subunits	8104314	4003043	SCOP2 (2022-06-29)
H [auth 8]	SCOP2 Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2 (2022-06-29)
J [auth A]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
M [auth F]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
Q [auth J]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
Z [auth T]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
U [auth N]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
K [auth D]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
FA [auth Z]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
BA [auth V]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Light-harvesting complex subunits	8104315	3000199	SCOP2B (2022-06-29)
AA [auth U]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
CA [auth W]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
EA [auth Y]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
G [auth 7]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
W [auth Q]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
Y [auth S]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
V [auth O]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
P [auth I]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
IA [auth n]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
I [auth 9]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
HA [auth m]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
GA [auth d]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
E [auth 5]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	Light-harvesting complex subunits	8076357	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth R]	LHC_like	e7oy8R1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
T [auth M]	Photo_RC	e7oy8M1	A: alpha bundles	X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	T: Bacterial photosystem II reaction centre L and M subunits-like	F: Photo_RC	ECOD (1.6)
S [auth L]	Photo_RC	e7oy8L1	A: alpha bundles	X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)	T: Bacterial photosystem II reaction centre L and M subunits-like	F: Photo_RC	ECOD (1.6)
O [auth H]	PRCH_C	e7oy8H1	A: beta barrels	X: SH3	H: PRC-barrel domain (From Topology)	T: PRC-barrel domain	F: PRCH_C	ECOD (1.6)
O [auth H]	PRCH_N	e7oy8H2	A: extended segments	X: Photosystem II reaction centre subunit H, transmembrane region (From Topology)	H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)	T: Photosystem II reaction centre subunit H, transmembrane region	F: PRCH_N	ECOD (1.6)
DA [auth X]	LHC_like	e7oy8X1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
F [auth 6]	LHC_like	e7oy861	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
H [auth 8]	LHC_like	e7oy881	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
J [auth A]	LHC_like	e7oy8A1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
M [auth F]	LHC_like	e7oy8F1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
Q [auth J]	LHC_like	e7oy8J1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
Z [auth T]	LHC_like	e7oy8T1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
U [auth N]	LHC_like	e7oy8N1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
N [auth G]	LHC_like	e7oy8G1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
L [auth E]	LHC_like	e7oy8E1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
K [auth D]	LHC_like	e7oy8D1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
FA [auth Z]	LHC_like	e7oy8Z1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
D [auth 4]	LHC_like	e7oy841	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
BA [auth V]	LHC_like	e7oy8V1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
B [auth 2]	LHC_like	e7oy821	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
AA [auth U]	LHC_like	e7oy8U1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
C [auth 3]	LHC_like	e7oy831	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
CA [auth W]	LHC_like	e7oy8W1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
EA [auth Y]	LHC_like	e7oy8Y1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
G [auth 7]	LHC_like	e7oy871	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
R [auth K]	LHC_like	e7oy8K1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
W [auth Q]	LHC_like	e7oy8Q1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
Y [auth S]	LHC_like	e7oy8S1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
V [auth O]	LHC_like	e7oy8O1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
P [auth I]	LHC_like	e7oy8I1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
IA [auth n]	LHC_like	e7oy8n1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
I [auth 9]	LHC_like	e7oy891	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
HA [auth m]	LHC_like	e7oy8m1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
GA [auth d]	LHC_like	e7oy8d1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
E [auth 5]	LHC_like	e7oy851	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
A [auth 1]	LHC_like	e7oy811	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O [auth H]	3.90.50.10	Alpha Beta	Alpha-Beta Complex	Photosynthetic Reaction Center	Chain H, domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
T [auth M]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
T [auth M]	PF00124	Photosynthetic reaction centre protein (Photo_RC)	Photosynthetic reaction centre protein	-	Family
S [auth L]	PF00124	Photosynthetic reaction centre protein (Photo_RC)	Photosynthetic reaction centre protein	-	Family
O [auth H]	PF03967	Photosynthetic reaction centre, H-chain N-terminal region (PRCH)	Photosynthetic reaction centre, H-chain N-terminal region	-	Family
O [auth H]	PF05239	PRC-barrel domain (PRC)	PRC-barrel domain	The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...	The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].	Domain
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
X [auth R]	Antenna complex, alpha/beta subunit	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
T [auth M]	Reaction center protein M chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane intracellular membraneless organelle plasma membrane-derived chromatophore intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm photosynthetic membrane thylakoid membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular vesicle light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle vesicle
S [auth L]	Photosynthetic reaction center L subunit	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure endomembrane system membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cellular anatomical structure endomembrane system membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
O [auth H]	Photosynthetic reaction center, H-chain	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm cellular anatomical structure membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	Antenna complex, alpha/beta subunit	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	Light-harvesting protein B-870 beta chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
X [auth R]	IPR000066	Antenna complex, alpha/beta subunit	Domain
X [auth R]	IPR018332	Antenna complex, alpha subunit	Family
X [auth R]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
X [auth R]	IPR035889	Light-harvesting complex	Homologous Superfamily
T [auth M]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
T [auth M]	IPR005781	Photosynthetic reaction centre, M subunit	Family
T [auth M]	IPR000484	Photosynthetic reaction centre, L/M	Family
T [auth M]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
S [auth L]	IPR036854	Photosystem II protein D1/D2 superfamily	Homologous Superfamily
S [auth L]	IPR000484	Photosynthetic reaction centre, L/M	Family
S [auth L]	IPR055265	Photosynthetic reaction centre, L/M, conserved site	Conserved Site
S [auth L]	IPR005871	Photosynthetic reaction centre, L subunit	Family
O [auth H]	IPR014747	Bacterial photosynthetic reaction centre, H-chain, C-terminal	Homologous Superfamily
O [auth H]	IPR015810	Photosynthetic reaction centre, H subunit, N-terminal	Domain
O [auth H]	IPR005652	Photosynthetic reaction centre, H subunit	Family
O [auth H]	IPR037097	Photosynthetic reaction centre, H subunit, N-terminal domain superfamily	Homologous Superfamily
O [auth H]	IPR011033	PRC-barrel-like superfamily	Homologous Superfamily
O [auth H]	IPR027275	PRC-barrel domain	Domain
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	IPR018332	Antenna complex, alpha subunit	Family
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], A [auth 1], AA [auth U], C [auth 3], CA [auth W], E [auth 5], EA [auth Y], G [auth 7], GA [auth d], HA [auth m], I [auth 9], IA [auth n], P [auth I], R [auth K], V [auth O], W [auth Q], Y [auth S]	IPR002362	Light-harvesting protein B beta chain	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth 1], AA [auth U], B [auth 2], BA [auth V], C [auth 3] A [auth 1], AA [auth U], B [auth 2], BA [auth V], C [auth 3], CA [auth W], D [auth 4], DA [auth X], E [auth 5], EA [auth Y], F [auth 6], FA [auth Z], G [auth 7], GA [auth d], H [auth 8], HA [auth m], I [auth 9], IA [auth n], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth Q], X [auth R], Y [auth S], Z [auth T]	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Bacterial photosystems

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth 1], AA [auth U], B [auth 2], BA [auth V], C [auth 3] A [auth 1], AA [auth U], B [auth 2], BA [auth V], C [auth 3], CA [auth W], D [auth 4], DA [auth X], E [auth 5], EA [auth Y], F [auth 6], FA [auth Z], G [auth 7], GA [auth d], H [auth 8], HA [auth m], I [auth 9], IA [auth n], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth Q], X [auth R], Y [auth S], Z [auth T]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth 1], AA [auth U], B [auth 2], BA [auth V], C [auth 3] A [auth 1], AA [auth U], B [auth 2], BA [auth V], C [auth 3], CA [auth W], D [auth 4], DA [auth X], E [auth 5], EA [auth Y], F [auth 6], FA [auth Z], G [auth 7], GA [auth d], H [auth 8], HA [auth m], I [auth 9], IA [auth n], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth Q], X [auth R], Y [auth S], Z [auth T]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Light-Harvesting+Reaction Center Complexes	LH1-RC super complex

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], B [auth 2], BA [auth V], D [auth 4], DA [auth X], F [auth 6], FA [auth Z], H [auth 8], J [auth A], K [auth D], L [auth E], M [auth F], N [auth G], Q [auth J], U [auth N], Z [auth T]	FME	Parent Component: MET RESID: AA0021 , AA0566 PSI-MOD : N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 7OY8 | pdb_00007oy8

Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Protein Modification Annotation

7OY8 | pdb_00007oy8