Bacteriophage PRD1 Major Capsid Protein P3 in complex with CPZ
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth A] | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
| A [auth C] | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032458 | 3001214 | SCOP2B (2022-06-29) |
| A [auth C] | SCOP2B Superfamily | Group II dsDNA viruses VP | 8032457 | 3001214 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | Phage_Capsid_P3_2nd | e7ookA2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_Capsid_P3_2nd | ECOD (1.6) |
| C [auth A] | Phage_Capsid_P3_1st | e7ookA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_Capsid_P3_1st | ECOD (1.6) |
| B | Phage_Capsid_P3_2nd | e7ookB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_Capsid_P3_2nd | ECOD (1.6) |
| B | Phage_Capsid_P3_1st | e7ookB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_Capsid_P3_1st | ECOD (1.6) |
| A [auth C] | Phage_Capsid_P3_2nd | e7ookC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_Capsid_P3_2nd | ECOD (1.6) |
| A [auth C] | Phage_Capsid_P3_1st | e7ookC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Phage_Capsid_P3_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth C], B, C [auth A] | PF25514 | P3 major capsid protein C-terminal (P3_C) | P3 major capsid protein C-terminal | The P3 major capsid protein adopts a 'double-sandwich' structure comprising two eight-stranded viral beta-sandwich domains with jellyroll fold, each of which contains a 12-residue alpha-helix. This protein trimerises through a 'trimerisation loop' se ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth C], B, C [auth A] | Major capsid protein P3 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth C], B, C [auth A] | IPR015108 | P3, N-terminal domain | Domain |
| A [auth C], B, C [auth A] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
| A [auth C], B, C [auth A] | IPR057669 | P3, C-terminal domain | Domain |
| A [auth C], B, C [auth A] | IPR016112 | Group II dsDNA virus coat/capsid protein | Homologous Superfamily |
| A [auth C], B, C [auth A] | IPR016115 | Bacteriophage PRD1, P3, N-terminal | Homologous Superfamily |
