7OOC
Mycoplasma pneumoniae 30S subunit of ribosomes in chloramphenicol-treated cells
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth F] | SCOP2B Superfamily | Ribosomal protein S7 | 8107618 | 3000799 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8107610 | 3000100 | SCOP2B (2022-06-29) |
F [auth J] | SCOP2 Family | Ribosomal protein L18p and S11 | 8107645 | 4000555 | SCOP2 (2022-06-29) |
F [auth J] | SCOP2 Superfamily | Translational machinery components | 8107646 | 3000571 | SCOP2 (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8107598 | 3001473 | SCOP2B (2022-06-29) |
I [auth O] | SCOP2 Family | Ribosomal protein S16 | 8107371 | 4001077 | SCOP2 (2022-06-29) |
I [auth O] | SCOP2 Superfamily | Ribosomal protein S16 | 8107372 | 3000680 | SCOP2 (2022-06-29) |
J [auth K] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8107620 | 3000135 | SCOP2B (2022-06-29) |
K [auth M] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8107656 | 3000068 | SCOP2B (2022-06-29) |
L [auth I] | SCOP2B Superfamily | Ribosomal protein S10 | 8107628 | 3001336 | SCOP2B (2022-06-29) |
M [auth L] | SCOP2B Superfamily | S13-like H2TH domain | 8107648 | 3000053 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8107606 | 3001284 | SCOP2B (2022-06-29) |
O [auth R] | SCOP2B Superfamily | Ribosomal protein S19 | 8107622 | 3000686 | SCOP2B (2022-06-29) |
Q [auth G] | SCOP2B Superfamily | Ribosomal protein S8 | 8107654 | 3000709 | SCOP2B (2022-06-29) |
T [auth P] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8107664 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth D] | PF03719 | e7oocD1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
B [auth D] | PF00333 | e7oocD2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
C [auth F] | PF00177 | e7oocF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
D [auth A] | PF00318 | e7oocA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
E [auth H] | PF00380 | e7oocH1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
F [auth J] | PF00411 | e7oocJ1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
G [auth C] | PF00163,PF01479 | e7oocC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
H [auth S] | PF01649 | e7oocS1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
I [auth O] | PF00886 | e7oocO1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
J [auth K] | PF00164 | e7oocK1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
K [auth M] | PF00253 | e7oocM1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
L [auth I] | PF00338 | e7oocI1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
M [auth L] | PF00416 | e7oocL1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
N | PF00312 | e7oocN1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
O [auth R] | PF00203 | e7oocR1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
P [auth T] | F_UNCLASSIFIED | e7oocT1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: F_UNCLASSIFIED | ECOD (1.6) |
Q [auth G] | PF00410 | e7oocG1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
Q [auth G] | PF00410 | e7oocG2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
R [auth Q] | PF01084 | e7oocQ1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
T [auth P] | PF00366 | e7oocP1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
A [auth B] | PF00189 | e7oocB2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
A [auth B] | PF07650 | e7oocB1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth D] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
B [auth D] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
C [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
D [auth A] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
E [auth H] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
F [auth J] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
G [auth C] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
G [auth C] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
H [auth S] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
I [auth O] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
J [auth K] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
K [auth M] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
L [auth I] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
M [auth L] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain | |
O [auth R] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
Q [auth G] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
R [auth Q] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
S [auth E] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
T [auth P] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
A [auth B] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
A [auth B] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |