7OOC

Mycoplasma pneumoniae 30S subunit of ribosomes in chloramphenicol-treated cells


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth F]SCOP2B SuperfamilyRibosomal protein S78107618 3000799 SCOP2B (2022-06-29)
E [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8107610 3000100 SCOP2B (2022-06-29)
F [auth J]SCOP2 FamilyRibosomal protein L18p and S118107645 4000555 SCOP2 (2022-06-29)
F [auth J]SCOP2 SuperfamilyTranslational machinery components8107646 3000571 SCOP2 (2022-06-29)
G [auth C]SCOP2B SuperfamilyAlpha-L RNA-binding motif8107598 3001473 SCOP2B (2022-06-29)
I [auth O]SCOP2 FamilyRibosomal protein S168107371 4001077 SCOP2 (2022-06-29)
I [auth O]SCOP2 SuperfamilyRibosomal protein S168107372 3000680 SCOP2 (2022-06-29)
J [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins8107620 3000135 SCOP2B (2022-06-29)
K [auth M]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107656 3000068 SCOP2B (2022-06-29)
L [auth I]SCOP2B SuperfamilyRibosomal protein S108107628 3001336 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyS13-like H2TH domain8107648 3000053 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyS15/NS1 RNA-binding domain8107606 3001284 SCOP2B (2022-06-29)
O [auth R]SCOP2B SuperfamilyRibosomal protein S198107622 3000686 SCOP2B (2022-06-29)
Q [auth G]SCOP2B SuperfamilyRibosomal protein S88107654 3000709 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyNucleic acid-binding proteins8107664 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth D]PF03719e7oocD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
B [auth D]PF00333e7oocD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
C [auth F]PF00177e7oocF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
D [auth A]PF00318e7oocA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
E [auth H]PF00380e7oocH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
F [auth J]PF00411e7oocJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
G [auth C]PF00163,PF01479e7oocC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
H [auth S]PF01649e7oocS1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
I [auth O]PF00886e7oocO1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
J [auth K]PF00164e7oocK1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
K [auth M]PF00253e7oocM1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
L [auth I]PF00338e7oocI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
M [auth L]PF00416e7oocL1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
NPF00312e7oocN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
O [auth R]PF00203e7oocR1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
P [auth T]F_UNCLASSIFIEDe7oocT1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: F_UNCLASSIFIEDECOD (1.6)
Q [auth G]PF00410e7oocG1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
Q [auth G]PF00410e7oocG2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
R [auth Q]PF01084e7oocQ1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
T [auth P]PF00366e7oocP1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
A [auth B]PF00189e7oocB2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
A [auth B]PF07650e7oocB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
B [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
C [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
D [auth A]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
E [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
F [auth J]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
G [auth C]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
G [auth C]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
H [auth S]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
I [auth O]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
J [auth K]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
K [auth M]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
L [auth I]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
M [auth L]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
O [auth R]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
Q [auth G]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
R [auth Q]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
S [auth E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
T [auth P]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
A [auth B]PF07650KH domain (KH_2)KH domain- Domain
A [auth B]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth D]30S ribosomal protein S5
C [auth F]30S ribosomal protein S7
D [auth A]30S ribosomal protein S2
E [auth H]30S ribosomal protein S9
F [auth J]30S ribosomal protein S11
G [auth C]30S ribosomal protein S4
H [auth S]30S ribosomal protein S20
I [auth O]30S ribosomal protein S16
J [auth K]30S ribosomal protein S12
K [auth M]30S ribosomal protein S14 type Z
L [auth I]30S ribosomal protein S10
M [auth L]30S ribosomal protein S13
30S ribosomal protein S15
O [auth R]30S ribosomal protein S19
P [auth T]30S ribosomal protein S21
Q [auth G]30S ribosomal protein S8
R [auth Q]30S ribosomal protein S18
S [auth E]30S ribosomal protein S6
T [auth P]30S ribosomal protein S17
U [auth 5]16S rRNA---
A [auth B]30S ribosomal protein S3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth D]IPR000851Small ribosomal subunit protein uS5Family
B [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
B [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
B [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
B [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
B [auth D]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
B [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
C [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
C [auth F]IPR000235Small ribosomal subunit protein uS7Family
C [auth F]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
C [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
C [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
D [auth A]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
D [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
D [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
D [auth A]IPR001865Small ribosomal subunit protein uS2Family
E [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
E [auth H]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
E [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth H]IPR000754Small ribosomal subunit protein uS9Family
E [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth J]IPR001971Small ribosomal subunit protein uS11Family
F [auth J]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
F [auth J]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
F [auth J]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
G [auth C]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
G [auth C]IPR002942RNA-binding S4 domainDomain
G [auth C]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
G [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth C]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
G [auth C]IPR022801Small ribosomal subunit protein uS4Family
H [auth S]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
H [auth S]IPR002583Small ribosomal subunit protein bS20Family
I [auth O]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
I [auth O]IPR000307Small ribosomal subunit protein bS16Family
J [auth K]IPR006032Small ribosomal subunit protein uS12Family
J [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth K]IPR005679Ribosomal protein uS12, bacterial-typeFamily
K [auth M]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
K [auth M]IPR001209Small ribosomal subunit protein uS14Family
K [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
K [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
L [auth I]IPR001848Small ribosomal subunit protein uS10Family
L [auth I]IPR027486Small ribosomal subunit protein uS10 domainDomain
L [auth I]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
L [auth I]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
M [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth L]IPR001892Small ribosomal subunit protein uS13Family
M [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth L]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR000589Small ribosomal subunit protein uS15Family
O [auth R]IPR002222Small ribosomal subunit protein uS19Family
O [auth R]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
O [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
O [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
P [auth T]IPR001911Small ribosomal subunit protein bS21Family
Q [auth G]IPR000630Small ribosomal subunit protein uS8Family
Q [auth G]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
Q [auth G]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
R [auth Q]IPR001648Small ribosomal subunit protein bS18Family
R [auth Q]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth Q]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth E]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
S [auth E]IPR000529Small ribosomal subunit protein bS6Family
S [auth E]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
S [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
S [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
T [auth P]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
T [auth P]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
T [auth P]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth P]IPR000266Small ribosomal subunit protein uS17Family
A [auth B]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
A [auth B]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
A [auth B]IPR004087K Homology domainDomain
A [auth B]IPR004044K Homology domain, type 2Domain
A [auth B]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
A [auth B]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
A [auth B]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
A [auth B]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site