7OM7 | pdb_00007om7

Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	EUF08097	e7om7D2	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: EUF08097	ECOD (1.6)
D	EUF08359	e7om7D1	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase	F: EUF08359	ECOD (1.6)
C	EUF08097	e7om7C1	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: EUF08097	ECOD (1.6)
C	EUF08359	e7om7C2	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase	F: EUF08359	ECOD (1.6)
B	EUF08097	e7om7B1	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: EUF08097	ECOD (1.6)
B	EUF08359	e7om7B2	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase	F: EUF08359	ECOD (1.6)
A	EUF08097	e7om7A2	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: EUF08097	ECOD (1.6)
A	EUF08359	e7om7A1	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase	F: EUF08359	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF22152	Permutotetravirus RNA-dependent RNA polymerase palm domain (Permu_RdRp_palm)	Permutotetravirus RNA-dependent RNA polymerase palm domain	This entry represents the palm domain of RdRp from Permutotetravirus, such as Thosea asigna virus (TaV) which is an insect virus that has a positive-sense ssRNA genome encoding a replicase and capsid proteins. The replicase has a non-canonical arrang ...	This entry represents the palm domain of RdRp from Permutotetravirus, such as Thosea asigna virus (TaV) which is an insect virus that has a positive-sense ssRNA genome encoding a replicase and capsid proteins. The replicase has a non-canonical arrangement in the palm sub-domain of the RNA-dependent RNA polymerase (RdRP), with a sequence permutation where the active site is anchored that is also found in Birnaviridae [1,2].	Domain
A, B, C, D	PF22260	Permutotetravirus RNA-dependent RNA polymerase thumb domain (Permu_RdRp_thumb)	Permutotetravirus RNA-dependent RNA polymerase thumb domain	This helical bundle domain, known as the thumb domain, is found in the RNA-dependent RNA polymerase (RdRp) of the Permutotetravirus Thosea asigna virus (TaV), C-terminal to the palm domain (Pfam:PF22152). This domain is larger than the thumb domains ...	This helical bundle domain, known as the thumb domain, is found in the RNA-dependent RNA polymerase (RdRp) of the Permutotetravirus Thosea asigna virus (TaV), C-terminal to the palm domain (Pfam:PF22152). This domain is larger than the thumb domains of other viral ssRNA RdRPs [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H, I E, F, G, H, I, J, K, L	RNA (5'-R(PAPAPAPUPUPU)-3')	-	-	-
A, B, C, D	RNA-dependent RNA polymerase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR054433	RNA-dependent RNA polymerase, thumb domain, ribovirus	Domain
A, B, C, D	IPR054403	RNA-dependent RNA polymerase, palm domain, ribovirus	Domain
A, B, C, D	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.