7OK9 | pdb_00007ok9

Crystal structure of Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus in complex with pentaglycine

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	SBP_bac_1	e7ok9L1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
K	SBP_bac_1	e7ok9K1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
J	SBP_bac_1	e7ok9J1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
I	SBP_bac_1	e7ok9I1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
H	SBP_bac_1	e7ok9H1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
G	SBP_bac_1	e7ok9G1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
F	SBP_bac_1	e7ok9F1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
E	SBP_bac_1	e7ok9E1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
D	SBP_bac_1	e7ok9D1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
C	SBP_bac_1	e7ok9C1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
B	SBP_bac_1	e7ok9B1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SBP_bac_1	ECOD (v294.1)
A	Cation_ATPase	e7ok9A1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cation_ATPase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
J	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
I	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
I	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
G	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
G	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
F	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
F	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
E	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
E	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
D	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
C	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
C	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
B	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
B	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)
A	3.30.70.2110	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
A	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Penicillin-binding protein 1	organic acid binding binding ion binding anion binding penicillin binding carboxylic acid binding heterocyclic compound binding monocarboxylic acid binding small molecule binding sulfur compound binding	cellular component organization cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization	cell periphery cellular anatomical structure plasma membrane membrane
M [auth P], N [auth Q], O [auth R], P [auth S], Q [auth T], M [auth P], N [auth Q], O [auth R], P [auth S], Q [auth T], R [auth U], S [auth V], T [auth W], U [auth X], V [auth Y]	pentaglycine	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005543	PASTA domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012338	Beta-lactamase/transpeptidase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005311	Penicillin-binding protein, dimerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001460	Penicillin-binding protein, transpeptidase	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050515	Class D beta-lactamase/transpeptidase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036138	Penicillin-binding protein, dimerisation domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.