7OHY | pdb_00007ohy

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth B]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
D [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
M [auth P]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
P [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
R [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
Z [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
U [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
K [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth B]e7ohyB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
D [auth C]e7ohyC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: DUF1870F:ECOD (20:10:01)
Fe7ohyF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
Ge7ohyG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
I [auth L]e7ohyL1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: DUF1870F:ECOD (20:10:01)
J [auth M]e7ohyM1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
L [auth O]e7ohyO1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
M [auth P]e7ohyP1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
N [auth Q]e7ohyQ1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
O [auth S]e7ohyS1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: DUF1870F:ECOD (20:10:01)
P [auth V]e7ohyV1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
R [auth Y]e7ohyY1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
Z [auth y]e7ohyy1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
He7ohyH1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
Ee7ohyE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
W [auth j]e7ohyj1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
V [auth h]e7ohyh1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: DUF1870F:ECOD (20:10:01)
U [auth f]e7ohyf1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
T [auth e]e7ohye1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
Q [auth W]e7ohyW1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)
K [auth N]e7ohyN1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: SNF2-rel_dom,Helicase_CF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain
C [auth B]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
D [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
D [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
J [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
J [auth M]PF00467KOW motif (KOW)KOW motif- Family
L [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
O [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
R [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
R [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
R [auth Y]PF00467KOW motif (KOW)KOW motif- Family
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
Q [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
Q [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
K [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]25S rRNA---
B [auth 2]5.8S rRNA---
C [auth B]60S ribosomal protein L3
D [auth C]60S ribosomal protein L4-A
60S ribosomal protein L7-A
60S ribosomal protein L8-A
I [auth L]60S ribosomal protein L13-A
J [auth M]60S ribosomal protein L14-A
L [auth O]60S ribosomal protein L16-A
M [auth P]60S ribosomal protein L17-A
N [auth Q]60S ribosomal protein L18-A
O [auth S]60S ribosomal protein L20-A
P [auth V]60S ribosomal protein L23-A
R [auth Y]60S ribosomal protein L26-A
S [auth b]Nucleolar GTP-binding protein 1
X [auth r]Ribosome biogenesis protein NSA2-
Z [auth y]Eukaryotic translation initiation factor 6
60S ribosomal protein L9-A
60S ribosomal protein L6-A
Y [auth u]Ribosome biogenesis protein RLP24
W [auth j]60S ribosomal protein L37-A
V [auth h]60S ribosomal protein L35-A
U [auth f]60S ribosomal protein L33-A
T [auth e]60S ribosomal protein L32
Q [auth W]Ribosome assembly factor MRT4
K [auth N]60S ribosomal protein L15-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
C [auth B]IPR000597Large ribosomal subunit protein uL3Family
C [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
C [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
D [auth C]IPR002136Large ribosomal subunit protein uL4Family
D [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
D [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
D [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
IPR039699Large ribosomal subunit protein uL30Family
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
I [auth L]IPR001380Large ribosomal subunit protein eL13Family
I [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
J [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth M]IPR039660Large ribosomal subunit protein eL14Family
J [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
J [auth M]IPR005824KOWDomain
L [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
L [auth O]IPR005822Large ribosomal subunit protein uL13Family
L [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
M [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
M [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
M [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
M [auth P]IPR001063Large ribosomal subunit protein uL22Family
N [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
N [auth Q]IPR000039Large ribosomal subunit protein eL18Family
N [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth S]IPR028877Large ribosomal subunit protein eL20Family
O [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
O [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
P [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
P [auth V]IPR000218Large ribosomal subunit protein uL14Family
P [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
R [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
R [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth Y]IPR005824KOWDomain
R [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth b]IPR024926Nucleolar GTP-binding protein 1Family
S [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
S [auth b]IPR012973NOG, C-terminalDomain
S [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
S [auth b]IPR041623NOG1, N-terminal helical domainDomain
S [auth b]IPR006073GTP binding domainDomain
S [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
X [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
X [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
Z [auth y]IPR002769Translation initiation factor IF6Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
Y [auth u]IPR011017TRASH domainDomain
Y [auth u]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
Y [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Y [auth u]IPR056366Large ribosomal subunit protein eL24Family
W [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
W [auth j]IPR001569Large ribosomal subunit protein eL37Family
W [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
W [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
V [auth h]IPR001854Large ribosomal subunit protein uL29Family
V [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
V [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
U [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
U [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
U [auth f]IPR001780Large ribosomal subunit protein eL33Family
U [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
T [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
T [auth e]IPR001515Large ribosomal subunit protein eL32Family
T [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
Q [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Q [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
Q [auth W]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
Q [auth W]IPR051742Ribosomal Assembly Factor uL10Family
Q [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
Q [auth W]IPR033867Ribosome assembly factor Mrt4Family
K [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
K [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
K [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
K [auth N]IPR000439Large ribosomal subunit protein eL15Family