7OHR | pdb_00007ohr

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
I [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
F [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
PA [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8061969 3000110 SCOP2B (2022-06-29)
LA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
JA [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
HA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
GA [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
DA [auth c]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
Z [auth X]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
X [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
W [auth U]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
T [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
S [auth P]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
R [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
Q [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth F]Ribosomal_L30_1e7ohrF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
H [auth E]Ribosomal_L6ee7ohrE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
G [auth D]F_UNCLASSIFIEDe7ohrD2 A: alpha duplicates or obligate multimersX: RNA helicase Hera dimerization domain (From Topology)H: RNA helicase Hera dimerization domain (From Topology)T: RNA helicase Hera dimerization domainF: F_UNCLASSIFIEDECOD (1.6)
G [auth D]DEADe7ohrD3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEADECOD (1.6)
G [auth D]Helicase_C_1e7ohrD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_C_1ECOD (1.6)
F [auth C]Ribosomal_L4e7ohrC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
F [auth C]Ribos_L4_asso_Ce7ohrC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
YA [auth y]eIF-6e7ohry1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
E [auth B]Ribosomal_L3e7ohrB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
UA [auth t]Ribosomal_L30_1e7ohrt1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
RA [auth q]Methyltr_RsmB-F_1e7ohrq1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltr_RsmB-F_1ECOD (1.6)
QA [auth p]ANAPC4_WD40_9e7ohrp1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_9ECOD (1.6)
D [auth A]Brixe7ohrA1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: BrixECOD (1.6)
MA [auth l]PUAe7ohrl2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: PUAECOD (1.6)
MA [auth l]KOG3492e7ohrl1 A: a+b two layersX: Cystatin-likeH: Pre-PUA domain (From Topology)T: Pre-PUA domainF: KOG3492ECOD (1.6)
LA [auth k]Ribosomal_L38ee7ohrk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
KA [auth j]Ribosomal_L37ee7ohrj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
JA [auth i]Ribosomal_L36ee7ohri1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
IA [auth h]Ribosomal_L29_2e7ohrh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
HA [auth g]Ribosomal_L34ee7ohrg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
GA [auth f]Ribosomal_L35Aee7ohrf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
FA [auth e]Ribosomal_L32ee7ohre1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
EA [auth d]Ribosomal_L31ee7ohrd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
DA [auth c]Ribosomal_L7Aee7ohrc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
BA [auth Z]Ribosomal_L27ee7ohrZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
AA [auth Y]Ribosomal_L26e7ohrY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
Z [auth X]Ribosomal_L23_3e7ohrX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
Y [auth W]Ribosomal_L10e7ohrW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
Y [auth W]Ribosomal_P0_L10ee7ohrW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
X [auth V]Ribosomal_L14e7ohrV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
W [auth U]Ribosomal_L22ee7ohrU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
V [auth S]Ribosomal_L18Ae7ohrS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
U [auth R]Ribosomal_L19e_Ne7ohrR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
U [auth R]Ribosomal_L19e_Ce7ohrR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
T [auth Q]Ribosomal_L18e7ohrQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
S [auth P]Ribosomal_L22e7ohrP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
R [auth O]Ribosomal_L13e7ohrO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
Q [auth N]Ribosomal_L15ee7ohrN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
P [auth M]Ribosomal_L14ee7ohrM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
O [auth L]Ribosomal_L13ee7ohrL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
N [auth K]Ribosomal_L1_2nde7ohrK1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2ndECOD (1.6)
N [auth K]Ribosomal_L1_1st_1e7ohrK2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
K [auth H]Ribosomal_L6_2e7ohrH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
K [auth H]Ribosomal_L6e7ohrH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
J [auth G]Ribosomal_L7Ae_1e7ohrG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
I [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
H [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
H [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
G [auth D]PF13959ATP-dependent rRNA helicase SPB4-like, C-terminal extension (CTE_SPB4)ATP-dependent rRNA helicase SPB4-like, C-terminal extensionThis short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual ...This short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual RecA domains (Pfam:PF00270 and Pfam:PF00271), a C-terminal extension (CTE, represented by this entry) and a C-terminal tail (Pfam:PF23681). This domain packs closely onto the catalytic core and engages the four nucleotides immediately 5' to those within the RNA binding pocket. It shows a mainly alpha- helical structure [1].
Domain
G [auth D]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
G [auth D]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
G [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
F [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
F [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
E [auth B]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain
E [auth B]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
D [auth A]PF04427Brix domain (Brix)Brix domainDomain
BA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
AA [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
AA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
Z [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
Z [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Y [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
Y [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
X [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
X [auth V]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
W [auth U]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
V [auth S]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
V [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
U [auth R]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
U [auth R]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
S [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
S [auth P]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
R [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
R [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Q [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
Q [auth N]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
P [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
P [auth M]PF00467KOW motif (KOW)KOW motif- Family
O [auth L]PF03657UPF0113 PUA domain (UPF0113)UPF0113 PUA domainDomain
O [auth L]PF17833NIP7/UPF0113, pre-PUA domain (pre-PUA_NIP7)NIP7/UPF0113, pre-PUA domainThis entry represents the N-terminal, pre-PUA domain of yeast 60S ribosome subunit biogenesis protein NIP7 and homologues, some uncharacterised proteins from the UPF0113 family and similar sequences from eukaryotes and some archaeal species. NIP7 is ...This entry represents the N-terminal, pre-PUA domain of yeast 60S ribosome subunit biogenesis protein NIP7 and homologues, some uncharacterised proteins from the UPF0113 family and similar sequences from eukaryotes and some archaeal species. NIP7 is required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly. This domain is found associated with Pfam:PF03657.
Domain
N [auth K]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
N [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
L [auth I]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
L [auth I]PF07540Nucleolar complex-associated protein (NOC3p)Nucleolar complex-associated protein- Family
K [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
K [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
J [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth F]60S ribosomal protein L7-A
H [auth E]60S ribosomal protein L6-A
G [auth D]ATP-dependent RNA helicase HAS1
F [auth C]60S ribosomal protein L4-A
YA [auth y]Eukaryotic translation initiation factor 6
XA [auth w]27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
E [auth B]60S ribosomal protein L3
WA [auth v]Nucleolar protein 16-
VA [auth u]Ribosome biogenesis protein RLP24
UA [auth t]Ribosome biogenesis protein RLP7
TA [auth s]Nuclear GTP-binding protein NUG1
SA [auth r]Ribosome biogenesis protein NSA2-
RA [auth q]25S rRNA (cytosine(2870)-C(5))-methyltransferase
QA [auth p]Ribosome biogenesis protein YTM1
PA [auth o]Ribosome biogenesis protein 15
OA [auth n]Pescadillo homolog
NA [auth m]Ribosome biogenesis protein ERB1
D [auth A]Ribosome biogenesis protein BRX1
MA [auth l]60S ribosome subunit biogenesis protein NIP7
LA [auth k]60S ribosomal protein L38
KA [auth j]60S ribosomal protein L37-A
JA [auth i]60S ribosomal protein L36-A
IA [auth h]60S ribosomal protein L35-A
HA [auth g]60S ribosomal protein L34-A
GA [auth f]60S ribosomal protein L33-A
FA [auth e]60S ribosomal protein L32
EA [auth d]60S ribosomal protein L31-A
DA [auth c]60S ribosomal protein L30
C [auth 6]ITS2---
CA [auth b]Nucleolar GTP-binding protein 1
BA [auth Z]60S ribosomal protein L27-A
AA [auth Y]60S ribosomal protein L26-A
Z [auth X]60S ribosomal protein L25
Y [auth W]Ribosome assembly factor MRT4
X [auth V]60S ribosomal protein L23-A
W [auth U]60S ribosomal protein L22-A
V [auth S]60S ribosomal protein L20-A
U [auth R]60S ribosomal protein L19-A
T [auth Q]60S ribosomal protein L18-A
B [auth 2]5.8S rRNA---
S [auth P]60S ribosomal protein L17-A
R [auth O]60S ribosomal protein L16-A
Q [auth N]60S ribosomal protein L15-A
P [auth M]60S ribosomal protein L14-A
O [auth L]60S ribosomal protein L13-A
N [auth K]Proteasome-interacting protein CIC1
M [auth J]rRNA-processing protein EBP2
L [auth I]Nucleolar complex-associated protein 3
K [auth H]60S ribosomal protein L9-A
J [auth G]60S ribosomal protein L8-A
A [auth 1]25S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
I [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
I [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
I [auth F]IPR039699Large ribosomal subunit protein uL30Family
I [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
I [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
I [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
H [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
H [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth E]IPR000915Large ribosomal subunit protein eL6Family
G [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
G [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
G [auth D]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
G [auth D]IPR011545DEAD/DEAH-box helicase domainDomain
G [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth D]IPR001650Helicase, C-terminal domain-likeDomain
G [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
G [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
F [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
F [auth C]IPR002136Large ribosomal subunit protein uL4Family
F [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
F [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
F [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
YA [auth y]IPR002769Translation initiation factor IF6Family
XA [auth w]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
XA [auth w]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
XA [auth w]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
XA [auth w]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
XA [auth w]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
XA [auth w]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
XA [auth w]IPR050082Ribosomal RNA large subunit methyltransferase RlmEFamily
E [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
E [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
WA [auth v]IPR019002Ribosome biogenesis protein Nop16Family
VA [auth u]IPR011017TRASH domainDomain
VA [auth u]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
VA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
VA [auth u]IPR056366Large ribosomal subunit protein eL24Family
UA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
UA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
UA [auth t]IPR039699Large ribosomal subunit protein uL30Family
UA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
UA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
TA [auth s]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
TA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
TA [auth s]IPR006073GTP binding domainDomain
TA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
TA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
TA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
SA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
SA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
RA [auth q]IPR018314RsmB/NOL1/NOP2-like, conserved siteConserved Site
RA [auth q]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
RA [auth q]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
RA [auth q]IPR023267RNA (C5-cytosine) methyltransferaseFamily
RA [auth q]IPR011023Nop2pDomain
RA [auth q]IPR023273RNA (C5-cytosine) methyltransferase, NOP2Family
RA [auth q]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
QA [auth p]IPR019775WD40 repeat, conserved siteConserved Site
QA [auth p]IPR012972NLEDomain
QA [auth p]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
QA [auth p]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
QA [auth p]IPR001680WD40 repeatRepeat
QA [auth p]IPR028599WD repeat WDR12/Ytm1Family
QA [auth p]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
PA [auth o]IPR000504RNA recognition motif domainDomain
PA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
PA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
PA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
OA [auth n]IPR010613PescadilloFamily
OA [auth n]IPR001357BRCT domainDomain
OA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
NA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
NA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
NA [auth m]IPR028598WD repeat BOP1/Erb1Family
NA [auth m]IPR001680WD40 repeatRepeat
NA [auth m]IPR012953BOP1, N-terminal domainDomain
NA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth A]IPR026532Ribosome biogenesis protein BRX1Family
D [auth A]IPR007109Brix domainDomain
MA [auth l]IPR015947PUA-like superfamilyHomologous Superfamily
MA [auth l]IPR005155UPF0113, PUA domainDomain
MA [auth l]IPR016686Ribosome biogenesis factor, NIP7Family
MA [auth l]IPR036974PUA domain superfamilyHomologous Superfamily
MA [auth l]IPR04059860S ribosome subunit biogenesis protein NIP7, pre-PUA domainDomain
MA [auth l]IPR002478PUA domainDomain
MA [auth l]IPR05535960S ribosome subunit biogenesis protein Nip7, pre-PUA domain, eukaryotesDomain
LA [auth k]IPR002675Large ribosomal subunit protein eL38Family
LA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
KA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
KA [auth j]IPR001569Large ribosomal subunit protein eL37Family
KA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
KA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth i]IPR000509Large ribosomal subunit protein eL36Family
JA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth h]IPR001854Large ribosomal subunit protein uL29Family
IA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
IA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
HA [auth g]IPR008195Large ribosomal subunit protein eL34Family
HA [auth g]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
HA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
GA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
GA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth f]IPR001780Large ribosomal subunit protein eL33Family
GA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
FA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
FA [auth e]IPR001515Large ribosomal subunit protein eL32Family
FA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
EA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
EA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
EA [auth d]IPR000054Large ribosomal subunit protein eL31Family
DA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
DA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
DA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
DA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
CA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
CA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
CA [auth b]IPR012973NOG, C-terminalDomain
CA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
CA [auth b]IPR041623NOG1, N-terminal helical domainDomain
CA [auth b]IPR006073GTP binding domainDomain
CA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
BA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
BA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
BA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
AA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
AA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth Y]IPR005824KOWDomain
AA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Z [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Z [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
Z [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Z [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
Y [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Y [auth W]IPR001790Large ribosomal subunit protein uL10Family
Y [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
Y [auth W]IPR051742Ribosomal Assembly Factor uL10Family
Y [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
Y [auth W]IPR033867Ribosome assembly factor Mrt4Family
X [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
X [auth V]IPR000218Large ribosomal subunit protein uL14Family
X [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
W [auth U]IPR002671Large ribosomal subunit protein eL22Family
W [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
V [auth S]IPR028877Large ribosomal subunit protein eL20Family
V [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
V [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
U [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth R]IPR039547Large ribosomal subunit protein eL19Family
U [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
U [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
T [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
T [auth Q]IPR000039Large ribosomal subunit protein eL18Family
T [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
S [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
S [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth P]IPR001063Large ribosomal subunit protein uL22Family
R [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
R [auth O]IPR005822Large ribosomal subunit protein uL13Family
R [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
Q [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Q [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Q [auth N]IPR000439Large ribosomal subunit protein eL15Family
P [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
P [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth M]IPR039660Large ribosomal subunit protein eL14Family
P [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
P [auth M]IPR005824KOWDomain
O [auth L]IPR001380Large ribosomal subunit protein eL13Family
O [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
N [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
N [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
M [auth J]IPR008610Eukaryotic rRNA processingFamily
L [auth I]IPR016024Armadillo-type foldHomologous Superfamily
L [auth I]IPR016903Nucleolar complex-associated protein 3Family
L [auth I]IPR011501Nucleolar complex-associated protein 3, N-terminalDomain
L [auth I]IPR005612CCAAT-binding factorDomain
K [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
J [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
J [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
J [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
J [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
J [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
J [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily