7OG0 | pdb_00007og0

Nontypeable Haemophillus influenzae SapA in open and closed conformations, in complex with double stranded RNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSBP_bac_5_1ste7og0B2 A: a+b two layersX: Alpha-beta plaitsH: Oligo-peptide binding protein (OPPA) insertion domain (From Topology)T: Oligo-peptide binding protein (OPPA) insertion domainF: SBP_bac_5_1stECOD (1.6)
BSBP_bac_5_3rde7og0B1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_5_3rdECOD (1.6)
BSBP_bac_5_2nde7og0B3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_5_2ndECOD (1.6)
ASBP_bac_5_1ste7og0A2 A: a+b two layersX: Alpha-beta plaitsH: Oligo-peptide binding protein (OPPA) insertion domain (From Topology)T: Oligo-peptide binding protein (OPPA) insertion domainF: SBP_bac_5_1stECOD (1.6)
ASBP_bac_5_3rde7og0A1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_5_3rdECOD (1.6)
ASBP_bac_5_2nde7og0A3 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_5_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00496Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)Bacterial extracellular solute-binding proteins, family 5 MiddleThe borders of this family are based on the PDBSum definitions of the domain edges for Swiss:P06202. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth D],
D [auth E]		RNA (5'-R(P*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*GP*GP*GP*GP*GP*GP*GP*GP*G)-3')---
A, B
ABC-type transport system, periplasmic component, involved in antimicrobial peptide resistance

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR000914Solute-binding protein family 5 domainDomain
A, B
IPR039424Solute-binding protein family 5Family
A, B
IPR030678Peptide/nickel binding protein, MppA-typeFamily
A, B
IPR023765Solute-binding protein family 5, conserved siteConserved Site