7OCD | pdb_00007ocd

Resting state GluA1/A2 heterotetramer in complex with auxiliary subunit TARP gamma 8 (LBD-TMD)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth I]PMP22_Claudine7ocdI1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
E [auth J]PMP22_Claudine7ocdJ1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
F [auth B]Lig_chane7ocdB1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
F [auth B]SBP_bac_3_1ste7ocdB2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
C [auth D]Lig_chane7ocdD1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
C [auth D]SBP_bac_3_1ste7ocdD2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
B [auth C]Lig_chane7ocdC1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
B [auth C]SBP_bac_3_1ste7ocdC2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
ALig_chane7ocdA1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
ASBP_bac_3_1ste7ocdA2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth I]1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
E [auth J]1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth D],
F [auth B]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
B [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth I],
E [auth J]		Voltage-dependent calcium channel gamma-8 subunit
C [auth D],
F [auth B]		Glutamate receptor 2
A,
B [auth C]		Isoform Flip of Glutamate receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth I],
E [auth J]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
D [auth I],
E [auth J]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
D [auth I],
E [auth J]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
D [auth I],
E [auth J]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
C [auth D],
F [auth B]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
C [auth D],
F [auth B]		IPR001508Ionotropic glutamate receptor, metazoaFamily
C [auth D],
F [auth B]		IPR001828Receptor, ligand binding regionDomain
C [auth D],
F [auth B]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
C [auth D],
F [auth B]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
C [auth D],
F [auth B]		IPR015683Ionotropic glutamate receptorFamily
A,
B [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
B [auth C]		IPR001828Receptor, ligand binding regionDomain
A,
B [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
B [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
B [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
B [auth C]		IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluA1/A2 Glutamate receptor (AMPA-subtype) in complex with TARP-γ8 and CNIH2 (LBD-TMD), resting state