7OCA | pdb_00007oca

Resting state full-length GluA1/A2 heterotertramer in complex with TARP gamma 8 and CNIH2

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth I]SCOP2B SuperfamilyClaudin-like 8094098 3002606 SCOP2B (2022-06-29)
F [auth J]SCOP2B SuperfamilyClaudin-like 8094098 3002606 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALig_chane7ocaA2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
AANF_receptor_2nde7ocaA3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2ndECOD (1.6)
AANF_receptor_1ste7ocaA4 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
ALig_chan_3e7ocaA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: Lig_chan_3ECOD (1.6)
ASBP_bac_3_1ste7ocaA5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
G [auth C]Lig_chane7ocaC3 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
G [auth C]ANF_receptor_2nde7ocaC4 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2ndECOD (1.6)
G [auth C]ANF_receptor_1ste7ocaC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
G [auth C]Lig_chan_3e7ocaC2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: Lig_chan_3ECOD (1.6)
G [auth C]SBP_bac_3_1ste7ocaC5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
D [auth I]PMP22_Claudine7ocaI1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
F [auth J]PMP22_Claudine7ocaJ1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
E [auth D]Lig_chane7ocaD3 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
E [auth D]ANF_receptor_2nde7ocaD2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2ndECOD (1.6)
E [auth D]ANF_receptor_1ste7ocaD5 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
E [auth D]Lig_chan_3e7ocaD4 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: Lig_chan_3ECOD (1.6)
E [auth D]SBP_bac_3_1ste7ocaD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
BLig_chane7ocaB4 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
BANF_receptor_2nde7ocaB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2ndECOD (1.6)
BANF_receptor_1ste7ocaB3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_1stECOD (1.6)
BLig_chan_3e7ocaB5 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: Lig_chan_3ECOD (1.6)
BSBP_bac_3_1ste7ocaB2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth I]1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)
F [auth J]1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
G [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
G [auth C]		PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A,
G [auth C]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
D [auth I],
F [auth J]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
C [auth G],
H [auth E]		PF03311Cornichon protein (Cornichon)Cornichon protein- Family
B,
E [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
B,
E [auth D]		PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
G [auth C]		Glutamate receptor 1
D [auth I],
F [auth J]		Voltage-dependent calcium channel gamma-8 subunit
C [auth G],
H [auth E]		Protein cornichon homolog 2
B,
E [auth D]		Glutamate receptor 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
G [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
G [auth C]		IPR001828Receptor, ligand binding regionDomain
A,
G [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
G [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
G [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
G [auth C]		IPR015683Ionotropic glutamate receptorFamily
D [auth I],
F [auth J]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
D [auth I],
F [auth J]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
D [auth I],
F [auth J]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
D [auth I],
F [auth J]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
C [auth G],
H [auth E]		IPR033466Cornichon, conserved siteConserved Site
C [auth G],
H [auth E]		IPR003377CornichonFamily
B,
E [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
B,
E [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
B,
E [auth D]		IPR001828Receptor, ligand binding regionDomain
B,
E [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
B,
E [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B,
E [auth D]		IPR015683Ionotropic glutamate receptorFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD