7OBE | pdb_00007obe

X-ray structure of the phosphatase PAPP5 from Arabidopsis thaliana

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L12_N	e7obeB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (develop294)
A	Acetyltransf_1	e7obeA1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Acetyltransf_1	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00149	Calcineurin-like phosphoesterase (Metallophos)	Calcineurin-like phosphoesterase	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ...	This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or yeast MRE11 Swiss:P32829. The most conserved regions in this superfamily centre around the metal chelating residues.	Domain
A, B	PF08321	PPP5 TPR repeat region (PPP5)	PPP5 TPR repeat region	-	Repeat
A, B	PF00515	Tetratricopeptide repeat (TPR_1)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Isoform 2 of Serine/threonine-protein phosphatase 5	binding tetrapyrrole binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation chloroplast-nucleus signaling pathway intracellular signal transduction cell communication cellular process signal transduction pigment metabolic process porphyrin-containing compound biosynthetic process negative regulation of biological process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation chloroplast-nucleus signaling pathway intracellular signal transduction cell communication cellular process signal transduction pigment metabolic process porphyrin-containing compound biosynthetic process negative regulation of biological process pigment biosynthetic process tetrapyrrole biosynthetic process negative regulation of chlorophyll biosynthetic process negative regulation of cellular process porphyrin-containing compound metabolic process regulation of tetrapyrrole biosynthetic process chlorophyll biosynthetic process regulation of chlorophyll biosynthetic process regulation of biosynthetic process tetrapyrrole metabolic process chlorophyll metabolic process negative regulation of metabolic process negative regulation of tetrapyrrole biosynthetic process regulation of chlorophyll metabolic process biosynthetic process negative regulation of biosynthetic process regulation of tetrapyrrole metabolic process metabolic process regulation of metabolic process localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport establishment of localization response to light stimulus cellular response to red or far red light red or far-red light signaling pathway cellular response to radiation response to red or far red light cellular response to environmental stimulus cellular response to light stimulus response to radiation response to abiotic stimulus cellular response to abiotic stimulus	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen nuclear membrane membrane organelle membrane cytoplasm cytosol cell-cell junction symplast anchoring junction cell junction plasmodesma organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051134	Protein Phosphatase PPP	Family
A, B	IPR013235	PPP domain	Domain
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR004843	Calcineurin-like, phosphoesterase domain	Domain
A, B	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
A, B	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Domain
A, B	IPR041753	PP5, C-terminal metallophosphatase domain	Domain
A, B	IPR019734	Tetratricopeptide repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.