7O6T | pdb_00007o6t

Crystal structure of the polymerising VEL domain of VIN3 (R556D I575D mutant)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF23380	VIN3-like, C-terminal domain (VIN3_C)	VIN3-like, C-terminal domain	This domain is found at the C-terminal end of Protein Vernalization Insensitive 3 from Arabidopsis thaliana (VIN3) and similar plant sequences. VIN3 plays a central role in vernalization by mediating the initial transcriptional repression of the home ...	This domain is found at the C-terminal end of Protein Vernalization Insensitive 3 from Arabidopsis thaliana (VIN3) and similar plant sequences. VIN3 plays a central role in vernalization by mediating the initial transcriptional repression of the homeotic gene FLC, a floral repressor, after a cold treatment. This domain, predicted to adopt an all-alpha structure, is often found associated with Pfam:PF07227 and Pfam:PF23376.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Protein VERNALIZATION INSENSITIVE 3	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	response to stimulus vernalization response response to stress response to abiotic stimulus response to cold response to temperature stimulus response to decreased oxygen levels response to hypoxia response to oxygen levels cellular response to stimulus cellular response to cold cellular response to stress cellular process regulation of cellular process response to stimulus vernalization response response to stress response to abiotic stimulus response to cold response to temperature stimulus response to decreased oxygen levels response to hypoxia response to oxygen levels cellular response to stimulus cellular response to cold cellular response to stress cellular process regulation of cellular process negative regulation of biological process cellular component organization chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle chromatin silencing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle chromatin silencing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen
A	Protein VERNALIZATION INSENSITIVE 3	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	response to stimulus vernalization response response to stress response to abiotic stimulus response to cold response to temperature stimulus response to decreased oxygen levels response to hypoxia response to oxygen levels cellular response to stimulus cellular response to cold cellular response to stress cellular process regulation of cellular process response to stimulus vernalization response response to stress response to abiotic stimulus response to cold response to temperature stimulus response to decreased oxygen levels response to hypoxia response to oxygen levels cellular response to stimulus cellular response to cold cellular response to stress cellular process regulation of cellular process negative regulation of biological process cellular component organization chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle chromatin silencing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle chromatin silencing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR003961	Fibronectin type III	Domain
B	IPR044514	Vernalization insensitive 3-like	Family
B	IPR058585	VIN3-like, fibronectin type-III domain	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR032881	Oberon-like, PHD finger domain	Domain
B	IPR056990	VIN3-like, C-terminal domain	Domain
B	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
A	IPR003961	Fibronectin type III	Domain
A	IPR044514	Vernalization insensitive 3-like	Family
A	IPR058585	VIN3-like, fibronectin type-III domain	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR032881	Oberon-like, PHD finger domain	Domain
A	IPR056990	VIN3-like, C-terminal domain	Domain
A	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.