7O06 | pdb_00007o06

Crystal structure of the N-terminal domain of CEP164(1-109) bound to camelid nanobody 10Z

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	zf-C3HC4	e7o06B1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v294.1)
A	ABC2_membrane	e7o06A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: ABC2_membrane	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1470.10	Alpha Beta	2-Layer Sandwich	Photosystem 1 Reaction Centre Subunit Ii	Chain: D	CATH (utative)
C	3.30.1470.10	Alpha Beta	2-Layer Sandwich	Photosystem 1 Reaction Centre Subunit Ii	Chain: D	CATH (utative)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A, B	Heavy Chain	IGHV1	-	centrosomal protein of 164 kda	SAbDab (2026-04-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Centrosomal protein of 164 kDa	-	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair cell division cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair cell division organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly	membrane-bounded organelle protein-containing complex cell projection cellular anatomical structure organelle cilium ciliary transition fiber intracellular protein-containing complex plasma membrane bounded cell projection ciliary transition zone intracellular organelle centrosome microtubule organizing center intracellular anatomical structure membrane-bounded organelle protein-containing complex cell projection cellular anatomical structure organelle cilium ciliary transition fiber intracellular protein-containing complex plasma membrane bounded cell projection ciliary transition zone intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton centriole cytoplasm cytosol sperm principal piece 9+2 motile cilium sperm flagellum motile cilium nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A, B	Camelid nanobody 10Z	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR036020	WW domain superfamily	Homologous Superfamily
C, D	IPR051841	Microtubule and Golgi organization protein	Family
C, D	IPR001202	WW domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: Q9UPV0	nephronophthisis 15 nephronophthisis Senior-Loken syndrome Ciliopathies malignant ependymoma ovarian cancer pituitary cancer ciliopathy medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma polydactyly ulcerative colitis osteosarcoma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.