7NZ2 | pdb_00007nz2

Cryo-EM structure of the MukBEF-MatP-DNA tetrad

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth D2]	Ribosomal_L12_N	e7nz2D21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
K [auth D1]	Ribosomal_L12_N	e7nz2D11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
J [auth C2]	Ribosomal_L12_N	e7nz2C21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
I [auth C1]	Ribosomal_L12_N	e7nz2C11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
T [auth F4]	Ribosomal_L12_N	e7nz2F41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
S [auth F3]	Ribosomal_L12_N	e7nz2F31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
R [auth F2]	Ribosomal_L12_N	e7nz2F21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
Q [auth F1]	Ribosomal_L12_N	e7nz2F11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
P [auth E4]	Ribosomal_L12_N	e7nz2E41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
O [auth E3]	Ribosomal_L12_N	e7nz2E31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
N [auth E2]	Ribosomal_L12_N	e7nz2E21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
M [auth E1]	Ribosomal_L12_N	e7nz2E11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
Z [auth H2]	Ribosomal_L12_N	e7nz2H21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
Y [auth H1]	Ribosomal_L12_N	e7nz2H11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
X [auth G4]	Ribosomal_L12_N	e7nz2G41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
W [auth G3]	Ribosomal_L12_N	e7nz2G31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
V [auth G2]	Ribosomal_L12_N	e7nz2G21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
U [auth G1]	Ribosomal_L12_N	e7nz2G11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
BA [auth H4]	Ribosomal_L12_N	e7nz2H41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
AA [auth H3]	Ribosomal_L12_N	e7nz2H31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
JA [auth J4]	Ribosomal_L12_N	e7nz2J41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
IA [auth J3]	Ribosomal_L12_N	e7nz2J31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
HA [auth J2]	Ribosomal_L12_N	e7nz2J21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
GA [auth J1]	Ribosomal_L12_N	e7nz2J11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
FA [auth I4]	Ribosomal_L12_N	e7nz2I41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
EA [auth I3]	Ribosomal_L12_N	e7nz2I31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
DA [auth I2]	Ribosomal_L12_N	e7nz2I21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
CA [auth I1]	Ribosomal_L12_N	e7nz2I11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	Chromosome partition protein MukB	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	Chromosome partition protein MukF	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm
M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], R [auth F2], S [auth F3], T [auth F4]	Chromosome partition protein MukE	-	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm
AA [auth H3], BA [auth H4], U [auth G1], V [auth G2], W [auth G3], AA [auth H3], BA [auth H4], U [auth G1], V [auth G2], W [auth G3], X [auth G4], Y [auth H1], Z [auth H2]	Acyl carrier protein	-	-	-
CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], HA [auth J2], IA [auth J3], JA [auth J4]	Macrodomain Ter protein	sequence-specific DNA binding DNA binding binding nucleic acid binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cell division	cellular anatomical structure intracellular anatomical structure cytoplasm
KA [auth K1], LA [auth K2], QA [auth N1], RA [auth N2]	matS2 DNA 80 b, oligo FBA769	-	-	-
MA [auth L1], NA [auth L2], OA [auth M1], PA [auth M2]	matS2 DNA 80 b, oligo FBA770	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	IPR042501	MukB, hinge domain superfamily	Homologous Superfamily
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	IPR050308	Chromosome partition protein MukB/SMC	Family
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	IPR007406	MukB, N-terminal domain	Domain
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	IPR032520	MukB, hinge domain	Domain
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	IPR012090	Chromosome partition protein MukB	Family
A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], A [auth A1], B [auth A2], C [auth A3], D [auth A4], E [auth B1], F [auth B2], G [auth B3], H [auth B4]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR005582	Chromosome partition protein MukF	Family
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR036141	MukF, middle domain superfamily	Homologous Superfamily
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR033439	Chromosome partition protein MukF, winged-helix domain	Domain
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR038198	MukF, C-terminal domain superfamily	Homologous Superfamily
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR033441	Chromosome partition protein MukF, C-terminal domain	Domain
I [auth C1], J [auth C2], K [auth D1], L [auth D2]	IPR033440	Chromosome partition protein MukF, middle domain	Domain
M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], R [auth F2], S [auth F3], T [auth F4]	IPR042038	MukE, N-terminal domain	Homologous Superfamily
M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], R [auth F2], S [auth F3], T [auth F4]	IPR042037	MukE, C-terminal domain	Homologous Superfamily
M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], M [auth E1], N [auth E2], O [auth E3], P [auth E4], Q [auth F1], R [auth F2], S [auth F3], T [auth F4]	IPR007385	Prokaryotic chromosome segregation/condensation protein MukE	Family
CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], HA [auth J2], IA [auth J3], JA [auth J4]	IPR013321	Arc-type ribbon-helix-helix	Homologous Superfamily
CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], HA [auth J2], IA [auth J3], JA [auth J4]	IPR009390	Macrodomain Ter protein, MatP	Family
CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], HA [auth J2], IA [auth J3], JA [auth J4]	IPR035375	MatP, C-terminal ribbon-helix-helix domain	Domain
CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], HA [auth J2], IA [auth J3], JA [auth J4]	IPR038339	MatP, N-terminal domain superfamily	Homologous Superfamily
CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], CA [auth I1], DA [auth I2], EA [auth I3], FA [auth I4], GA [auth J1], HA [auth J2], IA [auth J3], JA [auth J4]	IPR035087	MatP, N-terminal	Domain