7NYZ | pdb_00007nyz

Cryo-EM structure of the MukBEF-MatP-DNA monomer (partially open conformation)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ACP-like	8040084	3001805	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Ribosomal_L12_N	e7nyzJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
I	Ribosomal_L12_N	e7nyzI1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
H	Ribosomal_L12_N	e7nyzH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
G	Ribosomal_L12_N	e7nyzG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
F	Ribosomal_L12_N	e7nyzF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
E	Ribosomal_L12_N	e7nyzE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
D	Ribosomal_L12_N	e7nyzD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)
C	Ribosomal_L12_N	e7nyzC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L12_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G, H	PF00550	Phosphopantetheine attachment site (PP-binding)	Phosphopantetheine attachment site	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...	A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M, N	DNA 80 b	-	-	-
L	matS2 DNA 80 b, oligo FBA770	-	-	-
K	matS2 DNA 80 b, oligo FBA769	-	-	-
I, J	Macrodomain Ter protein	sequence-specific DNA binding DNA binding binding nucleic acid binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process cell division	cellular anatomical structure intracellular anatomical structure cytoplasm
G, H	Acyl carrier protein	phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding lipid binding vitamin binding modified amino acid binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding phosphopantetheine-dependent carrier activity prosthetic group binding binding acyl carrier activity molecular carrier activity ACP phosphopantetheine attachment site binding lipid binding vitamin binding modified amino acid binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding acyl binding	response to stimulus response to chemical response to xenobiotic stimulus fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process response to stimulus response to chemical response to xenobiotic stimulus fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process glycolipid metabolic process lipid A biosynthetic process liposaccharide metabolic process carbohydrate derivative metabolic process glycolipid biosynthetic process phospholipid biosynthetic process phospholipid metabolic process lipid A metabolic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process phosphorus metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol
E, F	Chromosome partition protein MukE	-	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm
C, D	Chromosome partition protein MukF	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm
A, B	Chromosome partition protein MukB	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cell division cell cycle chromosome segregation cell cycle process cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis	cellular anatomical structure nucleoid intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I, J	IPR013321	Arc-type ribbon-helix-helix	Homologous Superfamily
I, J	IPR009390	Macrodomain Ter protein, MatP	Family
I, J	IPR035375	MatP, C-terminal ribbon-helix-helix domain	Domain
I, J	IPR038339	MatP, N-terminal domain superfamily	Homologous Superfamily
I, J	IPR035087	MatP, N-terminal	Domain
G, H	IPR006162	Phosphopantetheine attachment site	PTM
G, H	IPR009081	Phosphopantetheine binding ACP domain	Domain
G, H	IPR036736	ACP-like superfamily	Homologous Superfamily
G, H	IPR003231	Acyl carrier protein	Family
E, F	IPR042038	MukE, N-terminal domain	Homologous Superfamily
E, F	IPR042037	MukE, C-terminal domain	Homologous Superfamily
E, F	IPR007385	Prokaryotic chromosome segregation/condensation protein MukE	Family
C, D	IPR005582	Chromosome partition protein MukF	Family
C, D	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C, D	IPR036141	MukF, middle domain superfamily	Homologous Superfamily
C, D	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C, D	IPR033439	Chromosome partition protein MukF, winged-helix domain	Domain
C, D	IPR038198	MukF, C-terminal domain superfamily	Homologous Superfamily
C, D	IPR033441	Chromosome partition protein MukF, C-terminal domain	Domain
C, D	IPR033440	Chromosome partition protein MukF, middle domain	Domain
A, B	IPR042501	MukB, hinge domain superfamily	Homologous Superfamily
A, B	IPR050308	Chromosome partition protein MukB/SMC	Family
A, B	IPR007406	MukB, N-terminal domain	Domain
A, B	IPR032520	MukB, hinge domain	Domain
A, B	IPR012090	Chromosome partition protein MukB	Family
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily