7NMU | pdb_00007nmu

Crystal structure of human platelet glycoprotein VI in complex with an inhibitory nanobody.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth BBB]	POLH-Rev1_HhH	e7nmuBBB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: POLH-Rev1_HhH	ECOD (v294.1)
A [auth AAA]	Omp85	e7nmuAAA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
D [auth CCC]	Omp85	e7nmuCCC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
C [auth DDD]	POLH-Rev1_HhH	e7nmuDDD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: POLH-Rev1_HhH	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB]	PF13927	Immunoglobulin domain (Ig_3)	Immunoglobulin domain	This family contains immunoglobulin-like domains.	Domain
A [auth AAA], B [auth BBB]	PF13895	Immunoglobulin domain (Ig_2)	Immunoglobulin domain	This domain contains immunoglobulin-like domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], B [auth BBB]	Platelet glycoprotein VI	molecular transducer activity signaling receptor activity collagen receptor activity transmembrane signaling receptor activity protein tyrosine kinase binding protein binding binding kinase binding enzyme binding protein kinase binding collagen binding protein-containing complex binding	multicellular organismal process regulation of body fluid levels wound healing response to stimulus cell activation hemostasis biological regulation blood coagulation response to stress coagulation cellular process regulation of biological quality response to wounding platelet activation multicellular organismal process regulation of body fluid levels wound healing response to stimulus cell activation hemostasis biological regulation blood coagulation response to stress coagulation cellular process regulation of biological quality response to wounding platelet activation cellular response to stimulus collagen-activated tyrosine kinase receptor signaling pathway regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction collagen-activated signaling pathway enzyme-linked receptor protein signaling pathway homotypic cell-cell adhesion platelet aggregation cell adhesion cell-cell adhesion immune response immune response-regulating signaling pathway regulation of response to stimulus immune system process regulation of immune response regulation of immune system process positive regulation of biological process regulation of cell activation positive regulation of cell-cell adhesion regulation of cell-cell adhesion regulation of multicellular organismal process positive regulation of cellular process regulation of homotypic cell-cell adhesion positive regulation of cell adhesion regulation of cell adhesion regulation of platelet activation regulation of platelet aggregation positive regulation of homotypic cell-cell adhesion positive regulation of platelet aggregation	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface cell periphery plasma membrane membrane membrane microdomain extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle cell surface cell periphery plasma membrane membrane membrane microdomain membrane raft extracellular matrix external encapsulating structure tetraspanin-enriched microdomain
C [auth DDD], D [auth CCC]	Nanobody 2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth BBB]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR003598	Immunoglobulin subtype 2	Domain
A [auth AAA], B [auth BBB]	IPR050412	Immunoglobulin-like Receptors in Immune Regulation	Family
A [auth AAA], B [auth BBB]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR003599	Immunoglobulin domain subtype	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth AAA], B [auth BBB]	Pharos: Q9HCN6	platelet-type bleeding disorder 11 B-cell chronic lymphocytic leukemia lymphoplasmacytic lymphoma malignant pancreatic neoplasm thrombotic disease Chronic graft-versus-host disease macroglobulinemia mantle cell lymphoma vascular disease exocrine pancreatic carcinoma Waldenstrom macroglobulinemia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.