7N4D | pdb_00007n4d

Translation initiation factor eif-5a family protein from Naegleria fowleri ATCC 30863

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d7n4dd1	All beta proteins	SH3-like barrel	Translation proteins SH3-like domain	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
D	d7n4dd2	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
C	d7n4dc1	All beta proteins	SH3-like barrel	Translation proteins SH3-like domain	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
C	d7n4dc2	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
B	d7n4db1	All beta proteins	SH3-like barrel	Translation proteins SH3-like domain	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
B	d7n4db2	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
A	d7n4da1	All beta proteins	SH3-like barrel	Translation proteins SH3-like domain	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)
A	d7n4da2	All beta proteins	OB-fold	Nucleic acid-binding proteins	automated matches	automated matches	Brain eating amoeba (Naegleria fowleri ) [TaxId: 5763 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e7n4dD1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Ribosomal_L12_N	F:	ECOD (20:10:01)
C		e7n4dC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Ribosomal_L12_N	F:	ECOD (20:10:01)
B		e7n4dB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Ribosomal_L12_N	F:	ECOD (20:10:01)
A		e7n4dA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Spuma_A9PTase	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21485	Translation initiation factor 5A-like, N-terminal (IF5A-like_N)	Translation initiation factor 5A-like, N-terminal	This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ...	This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation between consecutive proline residues [1-5]. This entry also includes Woronin body major protein Hex1, which is similar to eIF5A.	Domain
A, B, C, D	PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a)	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Eukaryotic translation initiation factor 5A	translation factor activity translation elongation factor activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding RNA binding nucleic acid binding	regulation of cellular process positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process regulation of translational elongation positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of cellular process positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process regulation of translational elongation positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression positive regulation of translational elongation biosynthetic process positive regulation of gene expression regulation of translation translational elongation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization positive regulation of cellular component organization protein-containing complex disassembly regulation of protein-containing complex disassembly cellular component organization translational termination cellular component organization or biogenesis positive regulation of protein-containing complex disassembly cellular component disassembly protein-containing complex organization regulation of translational termination positive regulation of translational termination	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A, B, C, D	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR001884	Translation elongation factor IF5A-like	Family
A, B, C, D	IPR048670	Translation initiation factor 5A-like, N-terminal	Domain
A, B, C, D	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, B, C, D	IPR019769	Translation initiation factor 5A, hypusine site	PTM
A, B, C, D	IPR020189	Translation initiation factor 5A, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.