7MYZ
Structure of the full length 5-TM receptor CD47 bound to Fab B6H12
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth D] | PF08204 | e7myzD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF08204 | ECOD (1.6) |
D [auth I] | PF07654 | e7myzI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth I] | PF07686 | e7myzI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth H] | PF07654 | e7myzH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth H] | PF07686 | e7myzH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth L] | PF07654 | e7myzL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth L] | PF07686 | e7myzL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth M] | PF07654 | e7myzM2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth M] | PF07686 | e7myzM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H], D [auth I] | Heavy Chain | IGHV5 | - | fusion protein of leukocyte surface antigen cd47 an solublecytochrome b562 | SAbDab (2024-04-26) |
E [auth L], F [auth M] | Light Chain | IGKV5 | Kappa | fusion protein of leukocyte surface antigen cd47 an solublecytochrome b562 | SAbDab (2024-04-26) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth D] | PF04549 | CD47 transmembrane region (CD47) | CD47 transmembrane region | - | Family |
A [auth C], B [auth D] | PF08204 | CD47 immunoglobulin-like domain (V-set_CD47) | CD47 immunoglobulin-like domain | This family represents the CD47 leukocyte antigen V-set like Ig domain [1,2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth D] | IPR010980 | Cytochrome c/b562 | Homologous Superfamily |
A [auth C], B [auth D] | IPR009155 | Cytochrome b562 | Family |
A [auth C], B [auth D] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth C], B [auth D] | IPR013270 | CD47 immunoglobulin-like | Domain |
A [auth C], B [auth D] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth C], B [auth D] | IPR037805 | Leukocyte surface antigen CD47, IgV | Domain |
A [auth C], B [auth D] | IPR007110 | Immunoglobulin-like domain | Domain |
A [auth C], B [auth D] | IPR006704 | Leukocyte surface antigen CD47 | Family |
A [auth C], B [auth D] | IPR013147 | CD47-like, transmembrane | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | CD47 family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Novel Membrane Proteins | marker of self 5-TM receptor CD47 |