7MUY

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 5


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DD [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
DG [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
F [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
HA [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
IB [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
JC [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
JD [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
RF [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
S [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
UA [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
VB [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
VC [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
XE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
EE [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
G [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
IA [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
JB [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
KC [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
KD [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
OG [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
SF [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
T [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
VA [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
WB [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
WC [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
YE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]TrbIe7muyAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
BA [auth BG]TrbIe7muyBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
CB [auth CG]TrbIe7muyCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DC [auth DG]TrbIe7muyDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
ED [auth EG]TrbIe7muyEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
EG [auth HG]TrbIe7muyHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FE [auth FG]TrbIe7muyFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FG [auth IG]TrbIe7muyIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GF [auth GG]TrbIe7muyGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GG [auth JG]TrbIe7muyJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
HG [auth KG]TrbIe7muyKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
IG [auth LG]TrbIe7muyLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
JG [auth MG]TrbIe7muyMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
KG [auth NG]TrbIe7muyNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
LG [auth OG]TrbIe7muyOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
MG [auth PG]TrbIe7muyPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DD [auth AK]OmpAe7muyAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
DG [auth DK]OmpAe7muyDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
F [auth EK]OmpAe7muyEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
HA [auth GK]OmpAe7muyGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
IB [auth IK]OmpAe7muyIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
JC [auth KK]OmpAe7muyKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
JD [auth MK]OmpAe7muyMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
RF [auth CK]OmpAe7muyCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
S [auth FK]OmpAe7muyFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
UA [auth HK]OmpAe7muyHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VB [auth JK]OmpAe7muyJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VC [auth LK]OmpAe7muyLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
XE [auth BK]OmpAe7muyBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
EE [auth AL]OmpAe7muyAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
G [auth EL]OmpAe7muyEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
IA [auth GL]OmpAe7muyGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
JB [auth IL]OmpAe7muyIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
KC [auth KL]OmpAe7muyKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
KD [auth ML]OmpAe7muyML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
OG [auth DL]OmpAe7muyDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
SF [auth CL]OmpAe7muyCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
T [auth FL]OmpAe7muyFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VA [auth HL]OmpAe7muyHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WB [auth JL]OmpAe7muyJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WC [auth LL]OmpAe7muyLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
YE [auth BL]OmpAe7muyBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].Domain
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
DotD- - -
DotF- -
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
DUF2807 domain-containing protein---
Neurogenic locus notch---
Unknown protein fragment---
Unknown protein fragment---
DotC- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR001646Pentapeptide repeatRepeat
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR031618Putative type IV secretory system proteinFamily