7MUY

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 5


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DD [auth AK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
DG [auth DK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
F [auth EK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
HA [auth GK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
JC [auth KK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
RF [auth CK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
S [auth FK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
UA [auth HK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
VB [auth JK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
VC [auth LK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
XE [auth BK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
IB [auth IK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
JD [auth MK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
EE [auth AL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
IA [auth GL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
JB [auth IL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
KD [auth ML]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
OG [auth DL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
VA [auth HL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
WB [auth JL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
WC [auth LL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
G [auth EL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
KC [auth KL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
SF [auth CL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
T [auth FL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
YE [auth BL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]PF03743e7muyAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
BA [auth BG]PF03743e7muyBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
CB [auth CG]PF03743e7muyCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
DC [auth DG]PF03743e7muyDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
ED [auth EG]PF03743e7muyEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
EG [auth HG]PF03743e7muyHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
FG [auth IG]PF03743e7muyIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
GF [auth GG]PF03743e7muyGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
JG [auth MG]PF03743e7muyMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
KG [auth NG]PF03743e7muyNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
LG [auth OG]PF03743e7muyOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
MG [auth PG]PF03743e7muyPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
FE [auth FG]PF03743e7muyFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
GG [auth JG]PF03743e7muyJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
HG [auth KG]PF03743e7muyKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
IG [auth LG]PF03743e7muyLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
DD [auth AK]PF00691e7muyAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
DG [auth DK]PF00691e7muyDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
F [auth EK]PF00691e7muyEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
HA [auth GK]PF00691e7muyGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
JC [auth KK]PF00691e7muyKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
RF [auth CK]PF00691e7muyCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
S [auth FK]PF00691e7muyFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
UA [auth HK]PF00691e7muyHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
VB [auth JK]PF00691e7muyJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
VC [auth LK]PF00691e7muyLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
XE [auth BK]PF00691e7muyBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
IB [auth IK]PF00691e7muyIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
JD [auth MK]PF00691e7muyMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
EE [auth AL]PF00691e7muyAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
IA [auth GL]PF00691e7muyGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
JB [auth IL]PF00691e7muyIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
KD [auth ML]PF00691e7muyML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
OG [auth DL]PF00691e7muyDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
VA [auth HL]PF00691e7muyHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
WB [auth JL]PF00691e7muyJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
WC [auth LL]PF00691e7muyLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
G [auth EL]PF00691e7muyEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
KC [auth KL]PF00691e7muyKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
SF [auth CL]PF00691e7muyCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
T [auth FL]PF00691e7muyFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
YE [auth BL]PF00691e7muyBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].Domain
PF12293Putative outer membrane core complex of type IVb secretion (T4BSS_DotH_IcmK)Putative outer membrane core complex of type IVb secretion- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF10988Putative auto-transporter adhesin, head GIN domain (DUF2807)Putative auto-transporter adhesin, head GIN domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
Unknown protein fragment---
DotC- - -
DotD- - -
DotF- -
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
DUF2807 domain-containing protein---
Neurogenic locus notch---
Unknown protein fragment---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR001646Pentapeptide repeatRepeat
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR031618Putative type IV secretory system proteinFamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR006665OmpA-like domainDomain
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR036737OmpA-like domain superfamilyHomologous Superfamily