7MUW

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 4


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DB [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
PA [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
AG [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
C [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
DA [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
EC [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
FD [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
O [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
OF [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
PB [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
RC [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
VE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
ZC [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
BE [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
P [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
SC [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
BG [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
D [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
EA [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
EB [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
FC [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
GD [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
PF [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
QA [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
QB [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
WE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
GF [auth GG]TrbIe7muwGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
KG [auth NG]TrbIe7muwNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
A [auth AG]TrbIe7muwAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
BA [auth BG]TrbIe7muwBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
CB [auth CG]TrbIe7muwCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DC [auth DG]TrbIe7muwDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
ED [auth EG]TrbIe7muwEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
EG [auth HG]TrbIe7muwHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FE [auth FG]TrbIe7muwFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FG [auth IG]TrbIe7muwIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GG [auth JG]TrbIe7muwJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
HG [auth KG]TrbIe7muwKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
IG [auth LG]TrbIe7muwLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
JG [auth MG]TrbIe7muwMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
LG [auth OG]TrbIe7muwOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
MG [auth PG]TrbIe7muwPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DB [auth IK]OmpAe7muwIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
PA [auth HK]OmpAe7muwHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
AG [auth DK]OmpAe7muwDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
C [auth EK]OmpAe7muwEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
DA [auth GK]OmpAe7muwGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
EC [auth KK]OmpAe7muwKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
FD [auth MK]OmpAe7muwMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
O [auth FK]OmpAe7muwFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
OF [auth CK]OmpAe7muwCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
PB [auth JK]OmpAe7muwJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
RC [auth LK]OmpAe7muwLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VE [auth BK]OmpAe7muwBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
ZC [auth AK]OmpAe7muwAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
BE [auth AL]OmpAe7muwAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
P [auth FL]OmpAe7muwFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
SC [auth LL]OmpAe7muwLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
BG [auth DL]OmpAe7muwDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
D [auth EL]OmpAe7muwEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
EA [auth GL]OmpAe7muwGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
EB [auth IL]OmpAe7muwIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
FC [auth KL]OmpAe7muwKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
GD [auth ML]OmpAe7muwML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
PF [auth CL]OmpAe7muwCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
QA [auth HL]OmpAe7muwHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
QB [auth JL]OmpAe7muwJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WE [auth BL]OmpAe7muwBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
DotF- -
DotC- - -
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
DUF2807 domain-containing protein---
Neurogenic locus notch---
Unknown protein fragment---
Unknown protein fragment---
DotD- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR001646Pentapeptide repeatRepeat
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR031618Putative type IV secretory system proteinFamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily