7MUV

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth GK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
AD [auth MK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
AG [auth DK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
C [auth EK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
MA [auth HK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
MB [auth JK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
N [auth FK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
NC [auth LK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
OF [auth CK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
VC [auth AK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
WE [auth BK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
ZA [auth IK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
ZB [auth KK]SCOP2B SuperfamilyOmpA-like8098176 3001650 SCOP2B (2022-06-29)
AB [auth IL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
AC [auth KL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
BD [auth ML]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
BG [auth DL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
CA [auth GL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
D [auth EL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
NA [auth HL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
NB [auth JL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
O [auth FL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
OC [auth LL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
PF [auth CL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
XD [auth AL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)
XE [auth BL]SCOP2B SuperfamilyOmpA-like8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]PF03743e7muvAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
BA [auth BG]PF03743e7muvBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
CB [auth CG]PF03743e7muvCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
DC [auth DG]PF03743e7muvDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
ED [auth EG]PF03743e7muvEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
EG [auth HG]PF03743e7muvHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
FE [auth FG]PF03743e7muvFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
FG [auth IG]PF03743e7muvIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
GF [auth GG]PF03743e7muvGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
GG [auth JG]PF03743e7muvJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
HG [auth KG]PF03743e7muvKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
IG [auth LG]PF03743e7muvLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
JG [auth MG]PF03743e7muvMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
KG [auth NG]PF03743e7muvNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
LG [auth OG]PF03743e7muvOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
MG [auth PG]PF03743e7muvPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: PF03743ECOD (1.6)
AA [auth GK]PF00691e7muvGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
AD [auth MK]PF00691e7muvMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
AG [auth DK]PF00691e7muvDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
C [auth EK]PF00691e7muvEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
MA [auth HK]PF00691e7muvHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
MB [auth JK]PF00691e7muvJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
N [auth FK]PF00691e7muvFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
NC [auth LK]PF00691e7muvLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
OF [auth CK]PF00691e7muvCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
VC [auth AK]PF00691e7muvAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
WE [auth BK]PF00691e7muvBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
ZA [auth IK]PF00691e7muvIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
ZB [auth KK]PF00691e7muvKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
AB [auth IL]PF00691e7muvIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
AC [auth KL]PF00691e7muvKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
BD [auth ML]PF00691e7muvML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
BG [auth DL]PF00691e7muvDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
CA [auth GL]PF00691e7muvGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
D [auth EL]PF00691e7muvEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
NA [auth HL]PF00691e7muvHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
NB [auth JL]PF00691e7muvJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
O [auth FL]PF00691e7muvFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
OC [auth LL]PF00691e7muvLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
PF [auth CL]PF00691e7muvCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
XD [auth AL]PF00691e7muvAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)
XE [auth BL]PF00691e7muvBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: PF00691ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF12293Putative outer membrane core complex of type IVb secretion (T4BSS_DotH_IcmK)Putative outer membrane core complex of type IVb secretion- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].Domain
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family
PF10988Putative auto-transporter adhesin, head GIN domain (DUF2807)Putative auto-transporter adhesin, head GIN domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
Neurogenic locus notch---
Unknown protein fragment---
Unknown protein fragment---
DotD- - -
DotF- -
DotC- - -
DUF2807 domain-containing protein---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR001646Pentapeptide repeatRepeat
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR006665OmpA-like domainDomain
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily
IPR031618Putative type IV secretory system proteinFamily