7MU2 | pdb_00007mu2

Crystal Structure of WIPI2 in complex with W2IR of ATG16L1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Aldedh	e7mu2C1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Aldedh	ECOD (v294.1)
A	14-3-3	e7mu2A1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: 14-3-3	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF21032	PROPPIN (PROPPIN)	PROPPIN	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Autophagy-related protein 16-1	identical protein binding protein binding binding	catabolic process autophagy microautophagy cellular process metabolic process process utilizing autophagic mechanism localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization autophagosome assembly catabolic process autophagy microautophagy cellular process metabolic process process utilizing autophagic mechanism localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization autophagosome assembly organelle assembly vacuole organization macroautophagy autophagosome organization cellular component biogenesis cellular component organization organelle organization cellular component assembly protein localization to phagophore assembly site cellular component organization or biogenesis	protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex Atg12-Atg5-Atg16 complex transferase complex cytoplasm vacuolar membrane membrane-bounded organelle autophagosome membrane membrane vacuole intracellular membrane-bounded organelle autophagosome protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex Atg12-Atg5-Atg16 complex transferase complex cytoplasm vacuolar membrane membrane-bounded organelle autophagosome membrane membrane vacuole intracellular membrane-bounded organelle autophagosome intracellular organelle bounding membrane of organelle organelle organelle membrane lytic vacuole lytic vacuole membrane lysosomal membrane lysosome cytosol endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle phagophore assembly site membrane phagophore assembly site
A, C	WD repeat domain phosphoinositide-interacting protein 2	phosphatidylinositol-3,5-bisphosphate binding ion binding binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding small molecule binding phosphatidylinositol-5-phosphate binding phosphatidylinositol-3-phosphate binding protein-macromolecule adaptor activity molecular adaptor activity	carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds macroautophagy glycogen metabolic process carbohydrate catabolic process autophagy primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process glycophagy carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds macroautophagy glycogen metabolic process carbohydrate catabolic process autophagy primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process glycophagy polysaccharide catabolic process metabolic process cellular process energy reserve metabolic process macromolecule metabolic process process utilizing autophagic mechanism cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress response to starvation cellular response to starvation autophagy of mitochondrion autophagosome assembly organelle assembly vacuole organization autophagosome organization cellular component biogenesis cellular component organization organelle organization cellular component assembly cellular component organization or biogenesis nucleophagy autophagy of peroxisome pexophagy localization macromolecule localization protein localization to phagophore assembly site intracellular protein localization	vacuolar membrane membrane-bounded organelle autophagosome membrane intracellular anatomical structure membrane vacuole intracellular membrane-bounded organelle autophagosome intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane vacuolar membrane membrane-bounded organelle autophagosome membrane intracellular anatomical structure membrane vacuole intracellular membrane-bounded organelle autophagosome intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane cytosol phagophore assembly site membrane phagophore assembly site nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR045160	Autophagy-related protein 16	Family
B, D	IPR019775	WD40 repeat, conserved site	Conserved Site
B, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B, D	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
B, D	IPR001680	WD40 repeat	Repeat
B, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B, D	IPR013923	Autophagy-related protein 16 domain	Domain
A, C	IPR048720	PROPPIN	Family
A, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C	IPR001680	WD40 repeat	Repeat
A, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: Q9Y4P8	large cell medulloblastoma psoriasis osteosarcoma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.