7MTW | pdb_00007mtw

Structure of the adeno-associated virus 9 capsid at pH 4.0

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth u]	GP120	e7mtwu1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
Z	GP120	e7mtwZ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
YA [auth t]	GP120	e7mtwt1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
Y	GP120	e7mtwY1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
XA [auth s]	GP120	e7mtws1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
X	GP120	e7mtwX1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
WA [auth r]	GP120	e7mtwr1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
W	GP120	e7mtwW1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
VA [auth q]	GP120	e7mtwq1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
V	GP120	e7mtwV1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
UA [auth p]	GP120	e7mtwp1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
U	GP120	e7mtwU1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
TA [auth o]	GP120	e7mtwo1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
T	GP120	e7mtwT1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
SA [auth n]	GP120	e7mtwn1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
S	GP120	e7mtwS1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
RA [auth m]	GP120	e7mtwm1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
R	GP120	e7mtwR1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
QA [auth l]	GP120	e7mtwl1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
Q	GP120	e7mtwQ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
PA [auth k]	GP120	e7mtwk1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
P	GP120	e7mtwP1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
OA [auth j]	GP120	e7mtwj1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
O	GP120	e7mtwO1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
NA [auth i]	GP120	e7mtwi1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
N	GP120	e7mtwN1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
MA [auth h]	GP120	e7mtwh1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
M	GP120	e7mtwM1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
LA [auth g]	GP120	e7mtwg1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
L	GP120	e7mtwL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
KA [auth f]	GP120	e7mtwf1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
K	GP120	e7mtwK1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
JA [auth e]	GP120	e7mtwe1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
J	GP120	e7mtwJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
IA [auth d]	GP120	e7mtwd1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
I	GP120	e7mtwI1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
HA [auth c]	GP120	e7mtwc1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
H	GP120	e7mtwH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
GB [auth 8]	GP120	e7mtw81	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
GA [auth b]	GP120	e7mtwb1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
G	GP120	e7mtwG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
FB [auth 7]	GP120	e7mtw71	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
FA [auth a]	GP120	e7mtwa1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
F	GP120	e7mtwF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
EB [auth z]	GP120	e7mtwz1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
EA [auth 5]	GP120	e7mtw51	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
E	GP120	e7mtwE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
DB [auth y]	GP120	e7mtwy1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
DA [auth 4]	GP120	e7mtw41	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
D	GP120	e7mtwD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
CB [auth x]	GP120	e7mtwx1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
CA [auth 3]	GP120	e7mtw31	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
C	GP120	e7mtwC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
BB [auth w]	GP120	e7mtww1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
BA [auth 2]	GP120	e7mtw21	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
B	GP120	e7mtwB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
AB [auth v]	GP120	e7mtwv1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
AA [auth 1]	GP120	e7mtw11	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)
A	GP120	e7mtwA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: GP120	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily