7MTW | pdb_00007mtw

Structure of the adeno-associated virus 9 capsid at pH 4.0

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Parvo_coat	e7mtwA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
AA [auth 1]	Parvo_coat	e7mtw11	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
AB [auth v]	Parvo_coat	e7mtwv1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
B	Parvo_coat	e7mtwB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
BA [auth 2]	Parvo_coat	e7mtw21	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
C	Parvo_coat	e7mtwC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
CB [auth x]	Parvo_coat	e7mtwx1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
D	Parvo_coat	e7mtwD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
DA [auth 4]	Parvo_coat	e7mtw41	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
DB [auth y]	Parvo_coat	e7mtwy1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
EA [auth 5]	Parvo_coat	e7mtw51	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
EB [auth z]	Parvo_coat	e7mtwz1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
FA [auth a]	Parvo_coat	e7mtwa1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
FB [auth 7]	Parvo_coat	e7mtw71	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
G	Parvo_coat	e7mtwG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
GB [auth 8]	Parvo_coat	e7mtw81	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
H	Parvo_coat	e7mtwH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
HA [auth c]	Parvo_coat	e7mtwc1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
IA [auth d]	Parvo_coat	e7mtwd1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
J	Parvo_coat	e7mtwJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
JA [auth e]	Parvo_coat	e7mtwe1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
KA [auth f]	Parvo_coat	e7mtwf1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
L	Parvo_coat	e7mtwL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
LA [auth g]	Parvo_coat	e7mtwg1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
M	Parvo_coat	e7mtwM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
MA [auth h]	Parvo_coat	e7mtwh1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
N	Parvo_coat	e7mtwN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
NA [auth i]	Parvo_coat	e7mtwi1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
O	Parvo_coat	e7mtwO1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
OA [auth j]	Parvo_coat	e7mtwj1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
PA [auth k]	Parvo_coat	e7mtwk1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
Q	Parvo_coat	e7mtwQ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
QA [auth l]	Parvo_coat	e7mtwl1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
R	Parvo_coat	e7mtwR1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
S	Parvo_coat	e7mtwS1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
SA [auth n]	Parvo_coat	e7mtwn1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
TA [auth o]	Parvo_coat	e7mtwo1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
U	Parvo_coat	e7mtwU1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
UA [auth p]	Parvo_coat	e7mtwp1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
V	Parvo_coat	e7mtwV1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
W	Parvo_coat	e7mtwW1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
WA [auth r]	Parvo_coat	e7mtwr1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
XA [auth s]	Parvo_coat	e7mtws1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
Y	Parvo_coat	e7mtwY1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
YA [auth t]	Parvo_coat	e7mtwt1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
Z	Parvo_coat	e7mtwZ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
ZA [auth u]	Parvo_coat	e7mtwu1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
X	Parvo_coat	e7mtwX1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
VA [auth q]	Parvo_coat	e7mtwq1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
T	Parvo_coat	e7mtwT1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
RA [auth m]	Parvo_coat	e7mtwm1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
P	Parvo_coat	e7mtwP1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
K	Parvo_coat	e7mtwK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
I	Parvo_coat	e7mtwI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
GA [auth b]	Parvo_coat	e7mtwb1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
F	Parvo_coat	e7mtwF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
E	Parvo_coat	e7mtwE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
CA [auth 3]	Parvo_coat	e7mtw31	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
BB [auth w]	Parvo_coat	e7mtww1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	PF00740	Parvovirus coat protein VP1/VP2 (VP1_2)	Parvovirus coat protein VP1/VP2	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-te ...	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal. VP2 is involved in packaging of the viral DNA [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily