7MRS | pdb_00007mrs

Zebrafish CNTN4 APPb complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyAmyloid beta a4 protein copper binding domain (domain 2) 8106127 4000572 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyAmyloid beta a4 protein copper binding domain (domain 2) 8106128 3000618 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BAPP_Cu_bde7mrsB1 A: a+b two layersX: Dodecin subunit-likeH: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology)T: Amyloid beta a4 protein copper binding domain (domain 2)F: APP_Cu_bdECOD (1.6)
Afn3e7mrsA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: fn3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF12924Copper-binding of amyloid precursor, CuBD (APP_Cu_bd)Copper-binding of amyloid precursor, CuBDThis short domain, part of the extra-cellular N-terminus of the amyloid precursor protein, APP, can bind both copper and zinc, CuBD. The structure of Cu2+-bound CuBD reveals that the metal ligands are His147, His151, Tyr168 and two water molecules, ...This short domain, part of the extra-cellular N-terminus of the amyloid precursor protein, APP, can bind both copper and zinc, CuBD. The structure of Cu2+-bound CuBD reveals that the metal ligands are His147, His151, Tyr168 and two water molecules, which are arranged in a square pyramidal geometry. The structure of Cu+-bound CuBD is almost identical to the Cu2+-bound structure except for the loss of one of the water ligands. The geometry of the site is unfavourable for Cu+, thus providing a mechanism by which CuBD could readily transfer Cu ions to other proteins.
Domain
PF00041Fibronectin type III domain (fn3)Fibronectin type III domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Amyloid-beta A4 protein
Contactin-4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019744Amyloidogenic glycoprotein, copper-binding domain conserved siteConserved Site
IPR013803Amyloidogenic glycoprotein, amyloid-beta peptideDomain
IPR019745Amyloidogenic glycoprotein, intracellular domain, conserved siteConserved Site
IPR011178Amyloidogenic glycoprotein, copper-bindingDomain
IPR002223Pancreatic trypsin inhibitor Kunitz domainDomain
IPR008154Amyloidogenic glycoprotein, extracellularDomain
IPR015849Amyloidogenic glycoprotein, heparin-bindingDomain
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR019543Beta-amyloid precursor protein C-terminalDomain
IPR036176E2 domain superfamilyHomologous Superfamily
IPR036454Amyloidogenic glycoprotein, heparin-binding domain superfamilyHomologous Superfamily
IPR020901Proteinase inhibitor I2, Kunitz, conserved siteConserved Site
IPR036880Pancreatic trypsin inhibitor Kunitz domain superfamilyHomologous Superfamily
IPR024329Amyloidogenic glycoprotein, E2 domainDomain
IPR036669Amyloidogenic glycoprotein, copper-binding domain superfamilyHomologous Superfamily
IPR008155Amyloidogenic glycoproteinFamily
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003598Immunoglobulin subtype 2Domain
IPR003961Fibronectin type IIIDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR003599Immunoglobulin domain subtypeDomain
IPR007110Immunoglobulin-like domainDomain
IPR013098Immunoglobulin I-setDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily