7MQ8

Cryo-EM structure of the human SSU processome, state pre-A1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth L4]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
E [auth L4]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
F [auth L5]SCOP2B SuperfamilyRibosomal protein S78066003 3000799 SCOP2B (2022-06-29)
G [auth L6]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
I [auth L8]SCOP2B Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2B (2022-06-29)
K [auth LA]SCOP2B SuperfamilyL30e-like8063978 3001739 SCOP2B (2022-06-29)
L [auth LC]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082685 3000100 SCOP2B (2022-06-29)
M [auth LD]SCOP2B SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2B (2022-06-29)
M [auth LD]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2B (2022-06-29)
O [auth LG]SCOP2B SuperfamilyNucleic acid-binding proteins8063426 3000135 SCOP2B (2022-06-29)
LA [auth NF]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2B (2022-06-29)
LA [auth NF]SCOP2B SuperfamilyHomeodomain-like8052958 3000001 SCOP2B (2022-06-29)
MA [auth NG]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
RA [auth NM]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
TA [auth NO]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
CB [auth SC]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063658 3000118 SCOP2B (2022-06-29)
DB [auth SD]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8063658 3000118 SCOP2B (2022-06-29)
EB [auth SE]SCOP2B SuperfamilyL30e-like8043738 3001739 SCOP2B (2022-06-29)
FB [auth SF]SCOP2B SuperfamilyL30e-like8043738 3001739 SCOP2B (2022-06-29)
JB [auth SJ]SCOP2B Superfamilyalpha/beta knot8084459 3001122 SCOP2B (2022-06-29)
KB [auth SK]SCOP2B Superfamilyalpha/beta knot8084459 3001122 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth L3]PF00416e7mq8L31 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
E [auth L4]PF00900e7mq8L43 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth L4]PF00467,PF16121e7mq8L42 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth L4]PF00900,PF01479,PF08071e7mq8L41 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
F [auth L5]PF00177e7mq8L51 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
G [auth L6]PF01092e7mq8L61 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
H [auth L7]PF01251e7mq8L71 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
I [auth L8]PF01201e7mq8L81 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
J [auth L9]PF00163,PF01479e7mq8L91 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
K [auth LA]PF01248e7mq8LA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
L [auth LC]PF00380e7mq8LC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
M [auth LD]PF00366,PF16205e7mq8LD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
N [auth LF]PF01282e7mq8LF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
O [auth LG]PF01200e7mq8LG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
R [auth LJ]PF00400e7mq8LJ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
R [auth LJ]PF09384e7mq8LJ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF09384ECOD (1.6)
S [auth LK]PF04003e7mq8LK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
V [auth LN]F_UNCLASSIFIEDe7mq8LN2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
V [auth LN]PF00400e7mq8LN1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]F_UNCLASSIFIEDe7mq8LO3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
W [auth LO]PF00400e7mq8LO2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
W [auth LO]PF04003e7mq8LO1 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
X [auth LP]PF08640e7mq8LP1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF08640ECOD (1.6)
Y [auth LQ]PF00400e7mq8LQ1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Y [auth LQ]PF04003e7mq8LQ2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04003ECOD (1.6)
Z [auth LR]PF00400e7mq8LR2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Z [auth LR]PF00400e7mq8LR1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
Z [auth LR]PF08625e7mq8LR3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF08625ECOD (1.6)
BA [auth LT]PF00400e7mq8LT1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
BA [auth LT]PF00400,PF12894e7mq8LT2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400,PF12894ECOD (1.6)
BA [auth LT]PF04192e7mq8LT3 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: PF04192ECOD (1.6)
EA [auth LZ]PF00163,PF01479e7mq8LZ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
LA [auth NF]PF08069e7mq8NF1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
LA [auth NF]PF00312e7mq8NF2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
MA [auth NG]PF00411e7mq8NG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
NA [auth NH]PF17403e7mq8NH5 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17403ECOD (1.6)
NA [auth NH]PF17406e7mq8NH2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: PF17406ECOD (1.6)
NA [auth NH]PF17404e7mq8NH4 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17404ECOD (1.6)
NA [auth NH]PF17407e7mq8NH6 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: PF17407ECOD (1.6)
NA [auth NH]PF03813e7mq8NH1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF03813ECOD (1.6)
NA [auth NH]PF17405e7mq8NH3 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: PF17405ECOD (1.6)
PA [auth NJ]PF13725e7mq8NJ4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF13725ECOD (1.6)
PA [auth NJ]PF13718,PF13725e7mq8NJ3 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: PF13718,PF13725ECOD (1.6)
PA [auth NJ]PF05127e7mq8NJ2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05127ECOD (1.6)
PA [auth NJ]PF08351e7mq8NJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF08351ECOD (1.6)
QA [auth NK]PF13725e7mq8NK4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF13725ECOD (1.6)
QA [auth NK]PF13718,PF13725e7mq8NK1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: PF13718,PF13725ECOD (1.6)
QA [auth NK]PF05127e7mq8NK2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF05127ECOD (1.6)
QA [auth NK]PF08351e7mq8NK3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF08351ECOD (1.6)
RA [auth NM]PF01015e7mq8NM2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
RA [auth NM]PF01015e7mq8NM1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
TA [auth NO]PF00410e7mq8NO2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
TA [auth NO]PF00410e7mq8NO1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
UA [auth NQ]PF01667e7mq8NQ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
WA [auth NT]PF01599e7mq8NT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
XA [auth NU]PF00833e7mq8NU1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
YA [auth NW]F_UNCLASSIFIEDe7mq8NW1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: F_UNCLASSIFIEDECOD (1.6)
AB [auth SA]PF01798e7mq8SA1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: PF01798ECOD (1.6)
AB [auth SA]PF01798e7mq8SA2 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF01798ECOD (1.6)
AB [auth SA]PF08156e7mq8SA3 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: PF08156ECOD (1.6)
CB [auth SC]PF01269e7mq8SC1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
DB [auth SD]PF01269e7mq8SD1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01269ECOD (1.6)
EB [auth SE]PF01248e7mq8SE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
FB [auth SF]PF01248e7mq8SF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HB [auth SH]PF01137e7mq8SH1 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: PF01137ECOD (1.6)
HB [auth SH]PF05189e7mq8SH2 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: PF05189ECOD (1.6)
JB [auth SJ]PF03587e7mq8SJ1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
KB [auth SK]PF03587e7mq8SK1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
PB [auth SR]PF00164e7mq8SR1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
TB [auth SW]PF17903e7mq8SW2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF17903ECOD (1.6)
TB [auth SW]PF22891e7mq8SW1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF22891ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth L4]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth L4]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth L4]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth L4]PF00467KOW motif (KOW)KOW motif- Family
F [auth L5]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
G [auth L6]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth L7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
I [auth L8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
J [auth L9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth L9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth LA]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
L [auth LC]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth LD]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth LD]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
N [auth LF]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
O [auth LG]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
R [auth LJ]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
R [auth LJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
S [auth LK],
T [auth LL]
PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
S [auth LK],
T [auth LL]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
U [auth LM]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
V [auth LN]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth LO]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
W [auth LO]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
X [auth LP]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Family
Y [auth LQ]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
Y [auth LQ]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
Y [auth LQ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Z [auth LR]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
AA [auth LS]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
BA [auth LT]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA.Domain
BA [auth LT]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
BA [auth LT]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CA [auth LU]PF08662Eukaryotic translation initiation factor eIF2A (eIF2A)Eukaryotic translation initiation factor eIF2A- Repeat
CA [auth LU]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
CA [auth LU]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DA [auth LW]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domainThis C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [1].Domain
DA [auth LW]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth LZ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
EA [auth LZ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
GA [auth NA]PF04006Mpp10 protein (Mpp10)Mpp10 protein- Family
HA [auth NB]PF09368Sas10 C-terminal domain (Sas10)Sas10 C-terminal domainSas10 is an Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in the production of the 18S rRNA and assembly of the small ribosomal subunit.Domain
JA [auth ND]PF08157NUC129 domain (NUC129)NUC129 domainThis C terminal domain is found in a novel family of hypothetical nucleolar proteins [1].Domain
KA [auth NE]PF15375Domain of unknown function (DUF4602) (DUF4602)Domain of unknown function (DUF4602)- Family
LA [auth NF]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
LA [auth NF]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
MA [auth NG]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
NA [auth NH]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
NA [auth NH]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
NA [auth NH]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
NA [auth NH]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
NA [auth NH]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
NA [auth NH]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
OA [auth NI]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1].Domain
OA [auth NI]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2].Domain
PA [auth NJ],
QA [auth NK]
PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
PA [auth NJ],
QA [auth NK]
PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminal- Family
PA [auth NJ],
QA [auth NK]
PF05127Helicase (Helicase_RecD)HelicaseThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1]. It is found in the bacterial exodeoxyribonuclease V alpha chain (RecD), which has 5'-3' helicase activity. It is structurally similar to the motor domain 1A in other SF1 helicases [2].
Domain
RA [auth NM]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
SA [auth NN]PF08164Apoptosis-antagonizing transcription factor, C-terminal (TRAUB)Apoptosis-antagonizing transcription factor, C-terminalThis C terminal domain is found in traube proteins [1]. This is the domain of the AATF proteins that interacts with BLOS2 or Ceap, that functions as an adaptor in processes such as protein and vesicle processing and transport, and perhaps transcripti ...This C terminal domain is found in traube proteins [1]. This is the domain of the AATF proteins that interacts with BLOS2 or Ceap, that functions as an adaptor in processes such as protein and vesicle processing and transport, and perhaps transcription.
Domain
TA [auth NO]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
UA [auth NQ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
XA [auth NU]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
ZA [auth NY]PF17903Krr1 KH1 domain (KH_8)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1].Domain
ZA [auth NY]PF21800KRR1 small subunit processome component, second KH domain (KRR1-like_KH2)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences.Domain
AB [auth SA]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
AB [auth SA]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
BB [auth SB]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1].Domain
BB [auth SB]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
CB [auth SC],
DB [auth SD]
PF01269Fibrillarin (Fibrillarin)Fibrillarin- Domain
EB [auth SE],
FB [auth SF]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
GB [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HB [auth SH]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
HB [auth SH]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
JB [auth SJ],
KB [auth SK]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
LB [auth SL]PF04900Fcf1 (Fcf1)Fcf1- Family
MB [auth SM]PF04427Brix domain (Brix)Brix domain- Domain
NB [auth SP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminalThis domain is found towards the N-terminal of eukaryotic proteins including U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and the homologue from human, also known as DRIM (Down-Regulated In Metastasis) (Swiss:O75691), which is diff ...This domain is found towards the N-terminal of eukaryotic proteins including U3 small nucleolar RNA-associated protein 20 (UTP20) from yeast and the homologue from human, also known as DRIM (Down-Regulated In Metastasis) (Swiss:O75691), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells [1]. Proteins of this entry are involved in processing of non-coding RNA as components of of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA [2,3]. UTP20 is a huge alpha-solenoid structure that functions as a scaffold [4,5].
Domain
OB [auth SQ]PF08698Fcf2 pre-rRNA processing (Fcf2)Fcf2 pre-rRNA processing- Family
PB [auth SR]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
QB [auth SS]PF04615Utp14 protein (Utp14)Utp14 protein- Family
VB [auth SY]PF03998Utp11 protein (Utp11)Utp11 protein- Family
P [auth LH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L0]5'ETS rRNA---
B [auth L1]18S rRNA---
C [auth L2]U3 snoRNA---
D [auth L3]40S ribosomal protein S18---
E [auth L4]40S ribosomal protein S4, X isoform
F [auth L5]40S ribosomal protein S5
G [auth L6]40S ribosomal protein S6
H [auth L7]40S ribosomal protein S7
I [auth L8]40S ribosomal protein S8
J [auth L9]40S ribosomal protein S9
K [auth LA]40S ribosomal protein S12
L [auth LC]40S ribosomal protein S16
M [auth LD]40S ribosomal protein S11
N [auth LF]40S ribosomal protein S24
O [auth LG]40S ribosomal protein S28
R [auth LJ]U3 small nucleolar RNA-associated protein 15 homolog
S [auth LK],
T [auth LL]
WD repeat-containing protein 43
U [auth LM]HEAT repeat-containing protein 1
V [auth LN]U3 small nucleolar RNA-associated protein 4 homolog
W [auth LO]Periodic tryptophan protein 2 homolog
X [auth LP]U3 small nucleolar RNA-associated protein 6 homolog
Y [auth LQ]WD repeat-containing protein 3
Z [auth LR]Transducin beta-like protein 3
AA [auth LS]U3 small nucleolar RNA-associated protein 18 homolog
BA [auth LT]WD repeat-containing protein 36
CA [auth LU]DDB1- and CUL4-associated factor 13
DA [auth LW]WD repeat-containing protein 46
EA [auth LZ]U3 small nucleolar ribonucleoprotein protein IMP3
FA [auth N0]5'ETS rRNA---
GA [auth NA]U3 small nucleolar ribonucleoprotein protein MPP10
HA [auth NB]Something about silencing protein 10
IA [auth NC]Neuroguidin
JA [auth ND]Nucleolar protein 7
KA [auth NE]Uncharacterized protein C1orf131
LA [auth NF]40S ribosomal protein S13
MA [auth NG]40S ribosomal protein S14
NA [auth NH]Nucleolar protein 6
OA [auth NI]Ribosomal RNA-processing protein 7 homolog A
PA [auth NJ],
QA [auth NK]
RNA cytidine acetyltransferase
RA [auth NM]40S ribosomal protein S3a
SA [auth NN]Protein AATF
TA [auth NO]40S ribosomal protein S15a
UA [auth NQ]40S ribosomal protein S27
VA [auth NR]RRP12-like protein---
WA [auth NT]Ubiquitin-40S ribosomal protein S27a---
XA [auth NU]40S ribosomal protein S17
YA [auth NW]Nucleolar protein 10
ZA [auth NY]KRR1 small subunit processome component homolog
AB [auth SA]Nucleolar protein 56
BB [auth SB]Nucleolar protein 58
CB [auth SC],
DB [auth SD]
rRNA 2'-O-methyltransferase fibrillarin
EB [auth SE],
FB [auth SF]
NHP2-like protein 1
GB [auth SG]U3 small nucleolar RNA-interacting protein 2
HB [auth SH]RNA 3'-terminal phosphate cyclase-like protein
IB [auth SI]Ribosome biogenesis protein BMS1 homolog---
JB [auth SJ],
KB [auth SK]
Ribosomal RNA small subunit methyltransferase NEP1
LB [auth SL]rRNA-processing protein FCF1 homolog
MB [auth SM]U3 small nucleolar ribonucleoprotein protein IMP4
NB [auth SP]Small subunit processome component 20 homolog
OB [auth SQ]Deoxynucleotidyltransferase terminal-interacting protein 2
PB [auth SR]40S ribosomal protein S23
QB [auth SS]U3 small nucleolar RNA-associated protein 14 homolog A
RB [auth ST]Nucleolar protein 14---
SB [auth SU]Nucleolar complex protein 4 homolog---
TB [auth SW]RNA-binding protein PNO1
UB [auth SX]Unassigned peptides---
VB [auth SY]Probable U3 small nucleolar RNA-associated protein 11
WB [auth SZ]Bystin---
P [auth LH]WD repeat-containing protein 75
Q [auth LI]Nucleolar protein 11---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth L4]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth L4]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth L4]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth L4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth L4]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth L4]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth L4]IPR002942RNA-binding S4 domainDomain
E [auth L4]IPR000876Small ribosomal subunit protein eS4Family
E [auth L4]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth L4]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth L4]IPR005824KOWDomain
F [auth L5]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth L5]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth L5]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth L5]IPR000235Small ribosomal subunit protein uS7Family
F [auth L5]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
G [auth L6]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
G [auth L6]IPR001377Small ribosomal subunit protein eS6Family
G [auth L6]IPR014401Small ribosomal subunit protein eS6-likeFamily
H [auth L7]IPR000554Small ribosomal subunit protein eS7Family
H [auth L7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth L8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth L8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth L8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth L8]IPR001047Small ribosomal subunit protein eS8Family
J [auth L9]IPR002942RNA-binding S4 domainDomain
J [auth L9]IPR022801Small ribosomal subunit protein uS4Family
J [auth L9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth L9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth L9]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth L9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth LA]IPR000530Small ribosomal subunit protein eS12Family
K [auth LA]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
K [auth LA]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
K [auth LA]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth LC]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth LC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth LC]IPR000754Small ribosomal subunit protein uS9Family
L [auth LC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth LD]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth LD]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth LD]IPR000266Small ribosomal subunit protein uS17Family
M [auth LD]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
N [auth LF]IPR001976Small ribosomal subunit protein eS24Family
N [auth LF]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth LF]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
O [auth LG]IPR028626Ribosomal protein eS28 conserved siteConserved Site
O [auth LG]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth LG]IPR000289Small ribosomal subunit protein eS28Family
R [auth LJ]IPR019775WD40 repeat, conserved siteConserved Site
R [auth LJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
R [auth LJ]IPR001680WD40 repeatRepeat
R [auth LJ]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
R [auth LJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
S [auth LK],
T [auth LL]
IPR007148Small-subunit processome, Utp12Domain
S [auth LK],
T [auth LL]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
S [auth LK],
T [auth LL]
IPR001680WD40 repeatRepeat
S [auth LK],
T [auth LL]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
U [auth LM]IPR016024Armadillo-type foldHomologous Superfamily
U [auth LM]IPR040191U3 small nucleolar RNA-associated protein 10Family
U [auth LM]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth LM]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
U [auth LM]IPR012954BP28, C-terminal domainDomain
V [auth LN]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth LN]IPR001680WD40 repeatRepeat
V [auth LN]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR019775WD40 repeat, conserved siteConserved Site
W [auth LO]IPR007148Small-subunit processome, Utp12Domain
W [auth LO]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
W [auth LO]IPR001680WD40 repeatRepeat
W [auth LO]IPR020472G-protein beta WD-40 repeatRepeat
W [auth LO]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth LO]IPR027145Periodic tryptophan protein 2Family
X [auth LP]IPR003107HAT (Half-A-TPR) repeatRepeat
X [auth LP]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth LP]IPR013949U3 small nucleolar RNA-associated protein 6Family
Y [auth LQ]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
Y [auth LQ]IPR019775WD40 repeat, conserved siteConserved Site
Y [auth LQ]IPR007148Small-subunit processome, Utp12Domain
Y [auth LQ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth LQ]IPR001680WD40 repeatRepeat
Y [auth LQ]IPR020472G-protein beta WD-40 repeatRepeat
Y [auth LQ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth LR]IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
Z [auth LR]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
Z [auth LR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth LR]IPR001680WD40 repeatRepeat
Z [auth LR]IPR020472G-protein beta WD-40 repeatRepeat
Z [auth LR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR019775WD40 repeat, conserved siteConserved Site
AA [auth LS]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR001680WD40 repeatRepeat
AA [auth LS]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth LS]IPR045161U3 small nucleolar RNA-associated protein 18Family
BA [auth LT]IPR007319Small-subunit processome, Utp21Domain
BA [auth LT]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
BA [auth LT]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth LT]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth LT]IPR001680WD40 repeatRepeat
BA [auth LT]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR013979Translation initiation factor, beta propellor-like domainDomain
CA [auth LU]IPR019775WD40 repeat, conserved siteConserved Site
CA [auth LU]IPR007287Sof1-like proteinDomain
CA [auth LU]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth LU]IPR001680WD40 repeatRepeat
CA [auth LU]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth LW]IPR012952BING4, C-terminal domainDomain
DA [auth LW]IPR001680WD40 repeatRepeat
DA [auth LW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
DA [auth LW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
DA [auth LW]IPR040315WD repeat-containing protein WDR46/Utp7Family
EA [auth LZ]IPR002942RNA-binding S4 domainDomain
EA [auth LZ]IPR022801Small ribosomal subunit protein uS4Family
EA [auth LZ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
EA [auth LZ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
GA [auth NA]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
HA [auth NB]IPR018972Sas10 C-terminal domainDomain
HA [auth NB]IPR007146Sas10/Utp3/C1DFamily
IA [auth NC]IPR007146Sas10/Utp3/C1DFamily
JA [auth ND]IPR039626Nucleolar protein 7Family
JA [auth ND]IPR012579U3 small nucleolar RNA-associated protein NOL7, C-terminalDomain
KA [auth NE]IPR027973Protein of unknown function DUF4602Family
LA [auth NF]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
LA [auth NF]IPR000589Small ribosomal subunit protein uS15Family
LA [auth NF]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
LA [auth NF]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
MA [auth NG]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
MA [auth NG]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
MA [auth NG]IPR001971Small ribosomal subunit protein uS11Family
NA [auth NH]IPR035367Nrap protein, domain 2Domain
NA [auth NH]IPR035368Nrap protein, domain 3Domain
NA [auth NH]IPR035370Nrap protein, domain 5Domain
NA [auth NH]IPR005554NOL6/Upt22Family
NA [auth NH]IPR035369Nrap protein, domain 4Domain
NA [auth NH]IPR035082Nrap protein domain 1Domain
NA [auth NH]IPR035371Nrap protein, domain 6Domain
OA [auth NI]IPR040446Ribosomal RNA-processing protein 7Family
OA [auth NI]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
OA [auth NI]IPR040447Rrp7, RRM-like N-terminal domainDomain
OA [auth NI]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
OA [auth NI]IPR035979RNA-binding domain superfamilyHomologous Superfamily
OA [auth NI]IPR034890Rrp7A, RNA recognition motifDomain
PA [auth NJ],
QA [auth NK]
IPR027992Possible tRNA binding domainDomain
PA [auth NJ],
QA [auth NK]
IPR013562tRNA(Met) cytidine acetyltransferase TmcA, N-terminalDomain
PA [auth NJ],
QA [auth NK]
IPR033688RNA cytidine acetyltransferase NAT10Family
PA [auth NJ],
QA [auth NK]
IPR000182GNAT domainDomain
PA [auth NJ],
QA [auth NK]
IPR007807Helicase domainDomain
PA [auth NJ],
QA [auth NK]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth NJ],
QA [auth NK]
IPR032672TmcA/NAT10/Kre33Family
PA [auth NJ],
QA [auth NK]
IPR016181Acyl-CoA N-acyltransferaseHomologous Superfamily
RA [auth NM]IPR001593Small ribosomal subunit protein eS1Family
RA [auth NM]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
RA [auth NM]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
SA [auth NN]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
SA [auth NN]IPR039223Protein AATF/Bfr2Family
SA [auth NN]IPR025160AATF leucine zipper-containing domainDomain
TA [auth NO]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
TA [auth NO]IPR000630Small ribosomal subunit protein uS8Family
TA [auth NO]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
UA [auth NQ]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
UA [auth NQ]IPR000592Small ribosomal subunit protein eS27Family
UA [auth NQ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XA [auth NU]IPR001210Small ribosomal subunit protein eS17Family
XA [auth NU]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
XA [auth NU]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
YA [auth NW]IPR001680WD40 repeatRepeat
YA [auth NW]IPR040382Nucleolar protein 10/Enp2Family
YA [auth NW]IPR012580NUC153Domain
YA [auth NW]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
YA [auth NW]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
ZA [auth NY]IPR041174KRR1 small subunit processome component, first KH domainDomain
ZA [auth NY]IPR024166Ribosomal RNA assembly KRR1Family
ZA [auth NY]IPR004087K Homology domainDomain
ZA [auth NY]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
ZA [auth NY]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
ZA [auth NY]IPR048548KRR1 small subunit processome component, second KH domainDomain
ZA [auth NY]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
AB [auth SA]IPR042239Nop, C-terminal domainHomologous Superfamily
AB [auth SA]IPR012974Nucleolar protein 58/56, N-terminalDomain
AB [auth SA]IPR002687Nop domainDomain
AB [auth SA]IPR012976NOSICDomain
AB [auth SA]IPR036070Nop domain superfamilyHomologous Superfamily
AB [auth SA]IPR045056Nucleolar protein Nop56/Nop58Family
BB [auth SB]IPR042239Nop, C-terminal domainHomologous Superfamily
BB [auth SB]IPR012974Nucleolar protein 58/56, N-terminalDomain
BB [auth SB]IPR002687Nop domainDomain
BB [auth SB]IPR012976NOSICDomain
BB [auth SB]IPR036070Nop domain superfamilyHomologous Superfamily
BB [auth SB]IPR045056Nucleolar protein Nop56/Nop58Family
CB [auth SC],
DB [auth SD]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
CB [auth SC],
DB [auth SD]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CB [auth SC],
DB [auth SD]
IPR020813Fibrillarin, conserved siteConserved Site
EB [auth SE],
FB [auth SF]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
EB [auth SE],
FB [auth SF]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
EB [auth SE],
FB [auth SF]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
EB [auth SE],
FB [auth SF]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EB [auth SE],
FB [auth SF]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
GB [auth SG]IPR019775WD40 repeat, conserved siteConserved Site
GB [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GB [auth SG]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
GB [auth SG]IPR001680WD40 repeatRepeat
GB [auth SG]IPR020472G-protein beta WD-40 repeatRepeat
GB [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HB [auth SH]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
HB [auth SH]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
HB [auth SH]IPR000228RNA 3'-terminal phosphate cyclaseFamily
HB [auth SH]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
HB [auth SH]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
HB [auth SH]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
HB [auth SH]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
HB [auth SH]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
JB [auth SJ],
KB [auth SK]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
JB [auth SJ],
KB [auth SK]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
JB [auth SJ],
KB [auth SK]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
LB [auth SL]IPR002716PIN domainDomain
LB [auth SL]IPR029060PIN-like domain superfamilyHomologous Superfamily
LB [auth SL]IPR006984rRNA-processing protein Fcf1/Utp23Family
LB [auth SL]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
MB [auth SM]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
MB [auth SM]IPR007109Brix domainDomain
NB [auth SP]IPR016024Armadillo-type foldHomologous Superfamily
NB [auth SP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
NB [auth SP]IPR046523U3 small nucleolar RNA-associated protein 20, C-terminalDomain
OB [auth SQ]IPR039883Fcf2/DNTTIP2Family
OB [auth SQ]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
PB [auth SR]IPR006032Small ribosomal subunit protein uS12Family
PB [auth SR]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
PB [auth SR]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
QB [auth SS]IPR006709Small-subunit processome, Utp14Family
TB [auth SW]IPR004087K Homology domainDomain
TB [auth SW]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
VB [auth SY]IPR007144Small-subunit processome, Utp11Family
P [auth LH]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
P [auth LH]IPR001680WD40 repeatRepeat
P [auth LH]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth L4]PharosP62701
F [auth L5]PharosP46782
G [auth L6]PharosP62753
H [auth L7]PharosP62081
I [auth L8]PharosP62241
J [auth L9]PharosP46781
K [auth LA]PharosP25398
L [auth LC]PharosP62249
M [auth LD]PharosP62280
N [auth LF]PharosP62847
O [auth LG]PharosP62857
R [auth LJ]PharosQ8TED0
S [auth LK],
T [auth LL]
PharosQ15061
U [auth LM]PharosQ9H583
V [auth LN]PharosQ969X6
W [auth LO]PharosQ15269
X [auth LP]PharosQ9NYH9
Y [auth LQ]PharosQ9UNX4
Z [auth LR]PharosQ12788
AA [auth LS]PharosQ9Y5J1
BA [auth LT]PharosQ8NI36
CA [auth LU]PharosQ9NV06
DA [auth LW]PharosO15213
EA [auth LZ]PharosQ9NV31
GA [auth NA]PharosO00566
HA [auth NB]PharosQ9NQZ2
IA [auth NC]PharosQ8NEJ9
JA [auth ND]PharosQ9UMY1
KA [auth NE]PharosQ8NDD1
LA [auth NF]PharosP62277
MA [auth NG]PharosP62263
NA [auth NH]PharosQ9H6R4
OA [auth NI]PharosQ9Y3A4
PA [auth NJ],
QA [auth NK]
PharosQ9H0A0
SA [auth NN]PharosQ9NY61
TA [auth NO]PharosP62244
UA [auth NQ]PharosP42677
XA [auth NU]PharosP08708
YA [auth NW]PharosQ9BSC4
ZA [auth NY]PharosQ13601
AB [auth SA]PharosO00567
BB [auth SB]PharosQ9Y2X3
CB [auth SC],
DB [auth SD]
PharosP22087
EB [auth SE],
FB [auth SF]
PharosP55769
GB [auth SG]PharosO43818
HB [auth SH]PharosQ9Y2P8
JB [auth SJ],
KB [auth SK]
PharosQ92979
LB [auth SL]PharosQ9Y324
MB [auth SM]PharosQ96G21
NB [auth SP]PharosO75691
OB [auth SQ]PharosQ5QJE6
PB [auth SR]PharosP62266
QB [auth SS]PharosQ9BVJ6
TB [auth SW]PharosQ9NRX1
VB [auth SY]PharosQ9Y3A2
P [auth LH]PharosQ8IWA0