Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]PF02359e7mdmB3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
A [auth B]PF17862e7mdmB6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
A [auth B]PF02933e7mdmB5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
A [auth B]PF00004e7mdmB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
B [auth C]PF02359e7mdmC3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
B [auth C]PF17862e7mdmC6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
B [auth C]PF02933e7mdmC5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
B [auth C]PF00004e7mdmC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
C [auth D]PF02359e7mdmD3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
C [auth D]PF17862e7mdmD6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
C [auth D]PF02933e7mdmD5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
C [auth D]PF00004e7mdmD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
D [auth E]PF02359e7mdmE3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
D [auth E]PF17862e7mdmE6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
D [auth E]PF02933e7mdmE5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
D [auth E]PF00004e7mdmE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
E [auth A]PF02359e7mdmA3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
E [auth A]PF17862e7mdmA6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
E [auth A]PF02933e7mdmA5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
E [auth A]PF00004e7mdmA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
FPF17862e7mdmF4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
FPF00004e7mdmF3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transitional endoplasmic reticulum ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR003959ATPase, AAA-type, coreDomain
IPR005938AAA ATPase, CDC48 familyFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
IPR003338CDC48, N-terminal subdomainDomain
IPR004201CDC48, domain 2Domain
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP55072