7M50
Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
BA [auth GG] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
CA [auth HH] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
DA [auth II] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
EA [auth JJ] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
FA [auth KK] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07641 | e7m50A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
B | EUF07641 | e7m50B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
BA [auth GG] | EUF07641 | e7m50GG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
C | EUF07641 | e7m50C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
CA [auth HH] | EUF07641 | e7m50HH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
D | EUF07641 | e7m50D1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
DA [auth II] | EUF07641 | e7m50II1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
E | EUF07641 | e7m50E1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
EA [auth JJ] | EUF07641 | e7m50JJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
F | EUF07641 | e7m50F1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
FA [auth KK] | EUF07641 | e7m50KK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
G | EUF07641 | e7m50G1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
H | EUF07641 | e7m50H1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
I | EUF07641 | e7m50I1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
J | EUF07641 | e7m50J1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
K | EUF07641 | e7m50K1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
L | EUF07641 | e7m50L1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
M | EUF07641 | e7m50M1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
N | EUF07641 | e7m50N1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
O | EUF07641 | e7m50O1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Coat protein | - | |||
GA [auth TT], P, S [auth V] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
Q [auth S], R [auth T] | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | - | - | - |
HA [auth UU], JA [auth bb], T [auth X] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
U [auth Y], V [auth a] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
IA [auth WW], W [auth e] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U))-3') | - | - | - |
X [auth h] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
LA [auth ll], MA [auth qq], Y [auth i] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
AA [auth n], KA [auth kk], Z [auth m] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily |