7M4V | pdb_00007m4v

A. baumannii Ribosome-Eravacycline complex: 50S


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth E]SCOP2B SuperfamilyRibosomal protein L4 8094701 3001146 SCOP2B (2022-06-29)
H [auth D]SCOP2B SuperfamilyTranslational proteins 8094765 3000811 SCOP2B (2022-06-29)
D [auth 3]SCOP2 FamilyRibosomal protein L36 8104258 4003715 SCOP2 (2022-06-29)
D [auth 3]SCOP2 SuperfamilyRibosomal protein L36 8104259 3001346 SCOP2 (2022-06-29)
DA [auth Z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8094090 3001320 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyL35p-like 8095141 3000790 SCOP2B (2022-06-29)
CA [auth Y]SCOP2 FamilyRibosomal protein L30p/L7e 8104260 4001360 SCOP2 (2022-06-29)
CA [auth Y]SCOP2 SuperfamilyRibosomal protein L30p/L7e 8104261 3001378 SCOP2 (2022-06-29)
BA [auth X]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8095223 3000713 SCOP2B (2022-06-29)
AA [auth W]SCOP2 FamilyRibosomal protein L28 8104252 4003961 SCOP2 (2022-06-29)
AA [auth W]SCOP2 SuperfamilyL28p-like 8104253 3001966 SCOP2 (2022-06-29)
Z [auth V]SCOP2B SuperfamilyRibosomal L27 protein-like 8094697 3000539 SCOP2B (2022-06-29)
Y [auth U]SCOP2B SuperfamilyRibosomal protein L25-like 8095559 3001161 SCOP2B (2022-06-29)
X [auth T]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8095143 3000334 SCOP2B (2022-06-29)
W [auth S]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095101 3000210 SCOP2B (2022-06-29)
V [auth R]SCOP2 FamilyRibosomal protein L22 8104238 4001212 SCOP2 (2022-06-29)
V [auth R]SCOP2 SuperfamilyRibosomal protein L22 8104239 3001078 SCOP2 (2022-06-29)
U [auth Q]SCOP2B Superfamilyl21p-like 8094927 3002005 SCOP2B (2022-06-29)
T [auth P]SCOP2 FamilyRibosomal protein L20 8104254 4001930 SCOP2 (2022-06-29)
T [auth P]SCOP2 SuperfamilyRibosomal protein L20 8104255 3000563 SCOP2 (2022-06-29)
S [auth O]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8094729 3000334 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyTranslational machinery components 8095061 3000571 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8094635 3000995 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8094629 3000884 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8094807 3001045 SCOP2B (2022-06-29)
N [auth J]SCOP2 FamilyRibosomal protein L14 8104262 4001826 SCOP2 (2022-06-29)
N [auth J]SCOP2 Superfamily50S Ribosomal protein L14-like 8104263 3000433 SCOP2 (2022-06-29)
M [auth I]SCOP2B SuperfamilyRibosomal protein L13 8094699 3001134 SCOP2B (2022-06-29)
L [auth H]SCOP2B SuperfamilyL9 N-domain-like 8094703 3000338 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyRL5-like 8094034 3001709 SCOP2B (2022-06-29)
A [auth 0]SCOP2 FamilyRibosomal protein L33p 8104240 4000511 SCOP2 (2022-06-29)
A [auth 0]SCOP2 SuperfamilyZn-binding ribosomal proteins 8104241 3001320 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth E]Ribosomal_L4e7m4vE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
H [auth D]Ribosomal_L3e7m4vD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
G [auth C]Ribosomal_L2_1e7m4vC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
G [auth C]Ribosomal_L2_Ce7m4vC2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
D [auth 3]Ribosomal_L36e7m4v31 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
DA [auth Z]Ribosomal_L32pe7m4vZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
C [auth 2]Ribosomal_L35pe7m4v21 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
CA [auth Y]Ribosomal_L30e7m4vY1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
BA [auth X]Ribosomal_L29e7m4vX1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
AA [auth W]Ribosomal_L28e7m4vW1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
Z [auth V]Ribosomal_L27e7m4vV1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
Y [auth U]Ribosomal_L25pe7m4vU1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
X [auth T]ribosomal_L24_1e7m4vT1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
W [auth S]Ribosomal_L23_2e7m4vS1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
V [auth R]Ribosomal_L22e7m4vR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
U [auth Q]Ribosomal_L21pe7m4vQ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
T [auth P]Ribosomal_L20e7m4vP1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
B [auth 1]Ribosomal_L34e7m4v11 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
S [auth O]Ribosomal_L19e7m4vO1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
R [auth N]Ribosomal_L18pe7m4vN1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
Q [auth M]Ribosomal_L17_1e7m4vM1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
P [auth L]Ribosomal_L16e7m4vL1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
O [auth K]Ribosomal_L27Ae7m4vK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
N [auth J]Ribosomal_L14e7m4vJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
M [auth I]Ribosomal_L13e7m4vI1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
L [auth H]Ribosomal_L9_Ne7m4vH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
K [auth G]Ribosomal_L6e7m4vG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
K [auth G]Ribosomal_L6_1e7m4vG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
J [auth F]Ribosomal_L5_Ce7m4vF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
A [auth 0]Ribosomal_L33e7m4v01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
O [auth K]3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2CATH (utative)
K [auth G]3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A domain 3CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth E]50S ribosomal protein L4
H [auth D]50S ribosomal protein L3
G [auth C]50S ribosomal protein L2
F [auth B]5s ribosomal RNA---
E [auth A]23s ribosomal RNA---
D [auth 3]50S ribosomal protein L36
DA [auth Z]50S ribosomal protein L32
C [auth 2]50S ribosomal protein L35
CA [auth Y]50S ribosomal protein L30
BA [auth X]50S ribosomal protein L29
AA [auth W]50S ribosomal protein L28
Z [auth V]50S ribosomal protein L27
Y [auth U]50S ribosomal protein L25
X [auth T]50S ribosomal protein L24
W [auth S]50S ribosomal protein L23
V [auth R]50S ribosomal protein L22
U [auth Q]50S ribosomal protein L21
T [auth P]50S ribosomal protein L20
B [auth 1]50S ribosomal protein L34
S [auth O]50S ribosomal protein L19
R [auth N]50S ribosomal protein L18
Q [auth M]50S ribosomal protein L17
P [auth L]50S ribosomal protein L16
O [auth K]50S ribosomal protein L15
N [auth J]50S ribosomal protein L14
M [auth I]50S ribosomal protein L13
L [auth H]50S ribosomal protein L9
K [auth G]50S ribosomal protein L6
J [auth F]50S ribosomal protein L5
A [auth 0]50S ribosomal protein L33

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
I [auth E]IPR002136Large ribosomal subunit protein uL4Family
I [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
H [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth D]IPR000597Large ribosomal subunit protein uL3Family
G [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
G [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
G [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
G [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
G [auth C]IPR002171Large ribosomal subunit protein uL2Family
D [auth 3]IPR000473Large ribosomal subunit protein bL36Family
D [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
DA [auth Z]IPR002677Large ribosomal subunit protein bL32Family
DA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth Z]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
C [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
C [auth 2]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
C [auth 2]IPR001706Large ribosomal subunit protein bL35Family
C [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
CA [auth Y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CA [auth Y]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
CA [auth Y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
BA [auth X]IPR050063Universal ribosomal protein uL29Family
BA [auth X]IPR001854Large ribosomal subunit protein uL29Family
BA [auth X]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AA [auth W]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth W]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
AA [auth W]IPR026569Large ribosomal subunit protein bL28Family
AA [auth W]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Z [auth V]IPR001684Large ribosomal subunit protein bL27Family
Z [auth V]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
Y [auth U]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
Y [auth U]IPR020055Ribosomal protein bL25, short-formFamily
Y [auth U]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
Y [auth U]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
Y [auth U]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
X [auth T]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
X [auth T]IPR003256Large ribosomal subunit protein uL24Family
X [auth T]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth T]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth T]IPR005824KOWDomain
X [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth T]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
W [auth S]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth S]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth S]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth R]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
V [auth R]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
V [auth R]IPR001063Large ribosomal subunit protein uL22Family
V [auth R]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
V [auth R]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
U [auth Q]IPR028909Large ribosomal subunit protein bL21-likeFamily
U [auth Q]IPR001787Large ribosomal subunit protein bL21Family
U [auth Q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
U [auth Q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
T [auth P]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
T [auth P]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
T [auth P]IPR005813Large ribosomal subunit protein bL20Family
B [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 1]IPR000271Large ribosomal subunit protein bL34Family
S [auth O]IPR001857Large ribosomal subunit protein bL19Family
S [auth O]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
S [auth O]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
S [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth N]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
R [auth N]IPR057268Large ribosomal subunit protein uL18Family
R [auth N]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
Q [auth M]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Q [auth M]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
Q [auth M]IPR000456Large ribosomal subunit protein bL17Family
P [auth L]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
P [auth L]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
P [auth L]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
P [auth L]IPR016180Large ribosomal subunit protein uL16 domainDomain
P [auth L]IPR047873Large ribosomal subunit protein uL16Family
O [auth K]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth K]IPR030878Large ribosomal subunit protein uL15Family
O [auth K]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
O [auth K]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth K]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
N [auth J]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
N [auth J]IPR000218Large ribosomal subunit protein uL14Family
N [auth J]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth J]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
M [auth I]IPR005822Large ribosomal subunit protein uL13Family
M [auth I]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
M [auth I]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
L [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
L [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
L [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
L [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
L [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
L [auth H]IPR000244Large ribosomal subunit protein bL9Family
K [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
K [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
J [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth F]IPR002132Large ribosomal subunit protein uL5Family
J [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
A [auth 0]IPR001705Large ribosomal subunit protein bL33Family
A [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site