7M22
Cryo-EM structure of the HCMV pentamer bound by human neuropilin 2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth N] | SCOP2B Superfamily | galactose-binding domain-like | 8069035 | 3000087 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | F_UNCLASSIFIED | e7m22C2 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: chemokine-related domain in glycoprotein L (gL) | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth C] | F_UNCLASSIFIED | e7m22C1 | A: beta barrels | X: UL128 C-terminal domain (From Topology) | H: UL128 C-terminal domain (From Topology) | T: UL128 C-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth D] | PF11668 | e7m22D1 | A: beta barrels | X: UL131A-like | H: UL130 C-terminal domain (From Topology) | T: UL130 C-terminal domain | F: PF11668 | ECOD (1.6) |
C [auth E] | F_UNCLASSIFIED | e7m22E1 | A: beta barrels | X: UL131A-like | H: UL131A (From Topology) | T: UL131A | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth N] | PF00431 | e7m22N3 | A: beta sandwiches | X: jelly-roll | H: Spermadhesin, CUB domain (From Topology) | T: Spermadhesin, CUB domain | F: PF00431 | ECOD (1.6) |
D [auth N] | PF00754 | e7m22N1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF00754 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth D] | PF11668 | HCMV glycoprotein pUL130 (Gp_UL130) | HCMV glycoprotein pUL130 | - | Family |
D [auth N] | PF00754 | F5/8 type C domain (F5_F8_type_C) | F5/8 type C domain | This domain is also known as the discoidin (DS) domain family [1]. | Domain |
D [auth N] | PF00431 | CUB domain (CUB) | CUB domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth D] | IPR021038 | Herpesvirus UL130, cytomegalovirus | Family |
D [auth N] | IPR035914 | Spermadhesin, CUB domain superfamily | Homologous Superfamily |
D [auth N] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
D [auth N] | IPR000421 | Coagulation factor 5/8 C-terminal domain | Domain |
D [auth N] | IPR014648 | Neuropilin | Family |
D [auth N] | IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily |
D [auth N] | IPR000998 | MAM domain | Domain |
D [auth N] | IPR000859 | CUB domain | Domain |
D [auth N] | IPR022579 | Neuropilin, C-terminal | Domain |