7LSY
NHEJ Short-range synaptic complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2022-06-29) |
P [auth X] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2022-06-29) |
Q [auth Y] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2022-06-29) |
J [auth K] | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2022-06-29) |
J [auth K] | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
M [auth O] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
M [auth O] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
N [auth P] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
N [auth P] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8051828 | 3001502 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8051827 | 3001319 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8051827 | 3001319 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8051828 | 3001502 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ku | e7lsyA2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: Ku | ECOD (1.6) |
A | Ku_N | e7lsyA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Ku_N | ECOD (1.6) |
I [auth J] | Ku | e7lsyJ2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: Ku | ECOD (1.6) |
I [auth J] | Ku_N | e7lsyJ1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Ku_N | ECOD (1.6) |
P [auth X] | PTCB-BRCT | e7lsyX2 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: PTCB-BRCT | ECOD (1.6) |
P [auth X] | BRCT_2_1 | e7lsyX1 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: BRCT_2_1 | ECOD (1.6) |
Q [auth Y] | DNA_ligase_A_C | e7lsyY2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: DNA_ligase_A_C | ECOD (1.6) |
Q [auth Y] | DNA_ligase_A_N | e7lsyY3 | A: alpha bundles | X: ATP-dependent DNA ligase DNA-binding domain (From Topology) | H: ATP-dependent DNA ligase DNA-binding domain (From Topology) | T: ATP-dependent DNA ligase DNA-binding domain | F: DNA_ligase_A_N | ECOD (1.6) |
Q [auth Y] | DNA_ligase_A_M | e7lsyY1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: DNA_ligase_A_M | ECOD (1.6) |
Q [auth Y] | PTCB-BRCT | e7lsyY4 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: PTCB-BRCT | ECOD (1.6) |
Q [auth Y] | BRCT_2_1 | e7lsyY5 | A: a/b three-layered sandwiches | X: BRCT domain (From Topology) | H: BRCT domain (From Topology) | T: BRCT domain | F: BRCT_2_1 | ECOD (1.6) |
B | Ku | e7lsyB1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: Ku | ECOD (1.6) |
B | Ku_N | e7lsyB2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Ku_N | ECOD (1.6) |
J [auth K] | Ku | e7lsyK2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: Ku | ECOD (1.6) |
J [auth K] | Ku_N | e7lsyK1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Ku_N | ECOD (1.6) |
E [auth F] | XRCC4_1st | e7lsyF1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XRCC4_1st | ECOD (1.6) |
E [auth F] | XRCC4_2nd | e7lsyF3 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XRCC4_2nd | ECOD (1.6) |
E [auth F] | XRCC4_3rd | e7lsyF2 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XRCC4_3rd | ECOD (1.6) |
F [auth G] | XRCC4_1st | e7lsyG3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XRCC4_1st | ECOD (1.6) |
F [auth G] | XRCC4_2nd | e7lsyG2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XRCC4_2nd | ECOD (1.6) |
F [auth G] | XRCC4_3rd | e7lsyG1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XRCC4_3rd | ECOD (1.6) |
M [auth O] | XRCC4_1st | e7lsyO3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XRCC4_1st | ECOD (1.6) |
M [auth O] | XRCC4_2nd | e7lsyO2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XRCC4_2nd | ECOD (1.6) |
M [auth O] | XRCC4_3rd | e7lsyO1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XRCC4_3rd | ECOD (1.6) |
N [auth P] | XRCC4_1st | e7lsyP1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XRCC4_1st | ECOD (1.6) |
N [auth P] | XRCC4_2nd | e7lsyP2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XRCC4_2nd | ECOD (1.6) |
N [auth P] | XRCC4_3rd | e7lsyP3 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XRCC4_3rd | ECOD (1.6) |
G [auth H] | XLF_N | e7lsyH1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XLF_N | ECOD (1.6) |
G [auth H] | XLF_like | e7lsyH2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XLF_like | ECOD (1.6) |
G [auth H] | XLF_C | e7lsyH3 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XLF_C | ECOD (1.6) |
H [auth I] | XLF_N | e7lsyI2 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XLF_N | ECOD (1.6) |
H [auth I] | XLF_like | e7lsyI3 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XLF_like | ECOD (1.6) |
H [auth I] | XLF_C | e7lsyI1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XLF_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, I [auth J] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
A, I [auth J] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
A, I [auth J] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
P [auth X], Q [auth Y] | PF11411 | DNA ligase IV (DNA_ligase_IV) | DNA ligase IV | - | Family |
P [auth X], Q [auth Y] | PF04675 | DNA ligase N terminus (DNA_ligase_A_N) | DNA ligase N terminus | - | Family |
P [auth X], Q [auth Y] | PF01068 | ATP dependent DNA ligase domain (DNA_ligase_A_M) | ATP dependent DNA ligase domain | This domain belongs to a more diverse superfamily, including Pfam:PF01331 and Pfam:PF01653 [3]. | Domain |
P [auth X], Q [auth Y] | PF04679 | ATP dependent DNA ligase C terminal region (DNA_ligase_A_C) | ATP dependent DNA ligase C terminal region | - | Family |
P [auth X], Q [auth Y] | PF00533 | BRCA1 C Terminus (BRCT) domain (BRCT) | BRCA1 C Terminus (BRCT) domain | - | Family |
B, J [auth K] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
B, J [auth K] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
B, J [auth K] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
E [auth F], F [auth G], M [auth O], N [auth P] | PF06632 | DNA double-strand break repair and V(D)J recombination protein XRCC4 (XRCC4) | DNA double-strand break repair and V(D)J recombination protein XRCC4 | - | Family |
G [auth H], H [auth I] | PF09302 | XLF-Cernunnos, XRcc4-like factor, NHEJ component (XLF) | XLF-Cernunnos, XRcc4-like factor, NHEJ component | - | Family |