7LIV

Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth J], B [auth A], C	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
D [auth 5], E [auth 6], F [auth 4]	PF06070	Herpesvirus large structural phosphoprotein UL32 (Herpes_UL32)	Herpesvirus large structural phosphoprotein UL32	-	Family
G [auth Z], H [auth D], I [auth E]	PF17086	Small capsid protein of Herpesviridae (HV_small_capsid)	Small capsid protein of Herpesviridae	-	Family
J [auth p]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
K [auth q], L [auth r]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth J], B [auth A], C	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
D [auth 5], E [auth 6], F [auth 4]	Tegument protein pp150	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell perinuclear region of cytoplasm host cell cytoplasm host cell cytoplasm part cytoplasmic viral factory host cell viral assembly compartment viral factory host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell perinuclear region of cytoplasm host cell cytoplasm host cell cytoplasm part cytoplasmic viral factory host cell viral assembly compartment viral factory host cell cytoplasmic vesicle virion component viral tegument
G [auth Z], H [auth D], I [auth E]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
J [auth p]	Triplex capsid protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
K [auth q], L [auth r]	Triplex capsid protein 2	structural molecule activity	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth J], B [auth A], C	IPR000912	Herpesvirus major capsid protein	Family
A [auth J], B [auth A], C	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
D [auth 5], E [auth 6], F [auth 4]	IPR010340	Herpesvirus UL11/UL32	Family
G [auth Z], H [auth D], I [auth E]	IPR031385	Small capsid protein, Herpesviridae	Family
J [auth p]	IPR004999	Herpesvirus capsid shell protein 1	Family
K [auth q], L [auth r]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.